View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11319_low_2 (Length: 408)
Name: NF11319_low_2
Description: NF11319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11319_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 1155463 - 1155150
Alignment:
| Q |
11 |
gtgagatgaaagaagcgattgcagttctaaccggtgcgacgaagaatgtgaagatcaatggcggcgagatcgagaaagagaagaagatctatcgtattca |
110 |
Q |
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| T |
1155463 |
gtgagatgaaagaagcgattgcagttctaaccggtgcgacgaagaatgtgaagatcaatggcggcgagatcgagaaagagaagaagatctatcgtattca |
1155364 |
T |
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| Q |
111 |
agtttccaagactaagaagcctctcttcttctaccttaacatcgctaaggtaattaggttttcgattttgattcaatcgctttttcttcatttcgnnnnn |
210 |
Q |
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| T |
1155363 |
agtttccaagactaagaagccactcttcttctaccttaacatcgctaaggtaattaggttttcgattttgattaaatcgccgtttcttcatttcgttttt |
1155264 |
T |
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| Q |
211 |
nnnatttctgattatgaatttcgtgtttctttctgattcagaaacacttgaagctggataatgatgttgagctctgtgctttgggaactggtataatttt |
310 |
Q |
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| T |
1155263 |
ttcatttctgattatggatttcgtgtttctttctgattcagaaacacttgaagctggataatgatgttgagctctgtgctttgggaactggtataatttt |
1155164 |
T |
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| Q |
311 |
ctttaatcctttta |
324 |
Q |
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| T |
1155163 |
ctttaatcctttta |
1155150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 392
Target Start/End: Complemental strand, 1155024 - 1154985
Alignment:
| Q |
353 |
gattatgtaattgataagctgaaattttaagataaaaact |
392 |
Q |
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| T |
1155024 |
gattatgtaattgataagctgaaattttgagataaaaact |
1154985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 233 - 299
Target Start/End: Original strand, 38664985 - 38665051
Alignment:
| Q |
233 |
gtgtttctttctgattcagaaacacttgaagctggataatgatgttgagctctgtgctttgggaact |
299 |
Q |
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| T |
38664985 |
gtgtttctttctgattcagaaacacttgaagctggataatgatgttgagctctatgctttgggaact |
38665051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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