View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11319_low_3 (Length: 397)
Name: NF11319_low_3
Description: NF11319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11319_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 18662075 - 18662444
Alignment:
| Q |
18 |
tctttctcgtacatcctctaaacctatgccatcattgttctgctgatgtgttccctgaactacattataataataccattatctctatacttactttctt |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18662075 |
tctttctcgtccatcctctaaacctatgccatcattgttctgctgatgtgttccctgaactacattataataataccattatctctatacttactttctt |
18662174 |
T |
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| Q |
118 |
ttagtacacagtgcacaaattccatccagattctctgataattgctgcagctgcctactattataactggatatttttccaacggattttcttaccaaag |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18662175 |
ttagtacacagtgcacaaattccatccagcttctctgataattgctgcagctgcctgctattataactggatatttttccaacggattttcttaccaaag |
18662274 |
T |
|
| Q |
218 |
ctaccgtcaacagacttgcaaggaactgatctccacattcctaaaatttcacttctgtcctaaaattataggaactgatctccactgctacggtcggaca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18662275 |
ctaccgtcaacagacttgcaaggaactgatctccacattcctaaaatttcacttctgtcctaaaattataggaactgatctccactgctacggtcggaca |
18662374 |
T |
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| Q |
318 |
tcttaacatggatctgtcctatttctgctatccccagttgccaagtttcacttcttcataactgcctttg |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18662375 |
tcttaacatggatctgtcctatttctgctatccccagttgccaagtttcacttcttcataactgcctttg |
18662444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 15081744 - 15081381
Alignment:
| Q |
18 |
tctttctcgtacatcctctaaacctatgccatcattgttctgctgatgtgttccctgaactacattataataataccattatctctatacttactttctt |
117 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15081744 |
tctttcttgtccatcctctaaacctatgccatcattgttctgctgatgtgttccctgaacta--ttataataataccattatctctatacttactttctt |
15081647 |
T |
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| Q |
118 |
ttagtacacagtgcacaaattccatccagattctctgataattgctgcagctgcctactattataactggatatttttccaacggattttcttaccaaag |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15081646 |
ttagtacacagtgcacaaattccatccagcttctctgataattgctgctgctgcttgctattataactggatatttttccaacggactttcttaccaaag |
15081547 |
T |
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| Q |
218 |
ctaccgtcaacagacttgcaaggaactgatctccacattcctaaaatttcacttctgtcctaaaattataggaactgatctccactgctacggtcggaca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15081546 |
ctaccgtcaacagacttgcaaggaactgatctccacattcctaaaatttcacttctgtcctaaaattataggaactgatctccactg----agtcggaca |
15081451 |
T |
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| Q |
318 |
tcttaacatggatctgtcctatttctgctatccccagttgccaagtttcacttcttcataactgcctttg |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15081450 |
tcttaacatggatctgtcctatttctgctatccccagttgccaagtttcacttcttcataactgcctttg |
15081381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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