View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11319_low_7 (Length: 242)
Name: NF11319_low_7
Description: NF11319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11319_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 24637063 - 24636857
Alignment:
| Q |
19 |
taaattatatggattccccgaaaaagaagtgatctgtgattctctttatgcaggcattatacagtgcctctcaacactggctattcccccaagatttatg |
118 |
Q |
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| T |
24637063 |
taaattatatggattccccgaaaaagaagtgatctgtgattctctttatgcaggcattatacagtgcctctcaacactggctattcccccaagatttatg |
24636964 |
T |
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| Q |
119 |
aggttgacattgactcaggttgtgaccacacttgggttcagtgtgatgcaccatgtataggttttatcaaggtgaagtcaaacttagatcaggcatcatt |
218 |
Q |
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| T |
24636963 |
aggttgacattgactcagtttgtgaccacacttgggttcagtgtgatgcaccatgtaaaggttttatcaaggtgaagtcaaacttagatcaggcatcatt |
24636864 |
T |
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| Q |
219 |
ctgatgt |
225 |
Q |
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||||||| |
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| T |
24636863 |
ctgatgt |
24636857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 24715606 - 24715391
Alignment:
| Q |
19 |
taaattatatggattccccgaaaaagaa----gtgatctgtgattctctttatgcaggcattatacagtgc---ctctcaacactggctattcccccaag |
111 |
Q |
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|||||||||||||||||| ||| || || ||||| ||| ||||||||||||||||||| ||||||| || |||||| ||||||| || | ||| |
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| T |
24715606 |
taaattatatggattccctgaagaaaaataaagtgatacgtggttctctttatgcaggcattgtacagtgtgatctatcaacattggctatgcctctaag |
24715507 |
T |
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| Q |
112 |
atttatgaggttgacattgactcaggttgtgaccacacttgggttcagtgtgatg--caccatgtataggttttatcaaggtgaagtcaaacttagatca |
209 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||| |||| ||||| ||||||| ||||||||||||||| | |
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| T |
24715506 |
ctttatgacgttgacattgactcaggttgtgacagcacttgggttcagtgtgatgcacaccttgtaaaggttgcatcaaggcgaagtcaaacttagacct |
24715407 |
T |
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| Q |
210 |
ggcatcattctgatgt |
225 |
Q |
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| T |
24715406 |
ggtatcattctgatgt |
24715391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 10330825 - 10330707
Alignment:
| Q |
63 |
tttatgcaggcattatacagtgcctctcaacactggctattcccccaagatttatgaggttgacattgactcaggttgtgaccacacttgggttcagtgt |
162 |
Q |
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|||||| ||| ||||||| || ||||||||| ||||||| | || ||| ||||||| |||| || ||||||||| |||||| |||||||||||||||| |
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| T |
10330825 |
tttatgtaggtattatactgtctctctcaacattggctatcctccaaagctttatgaccttgatatcgactcaggtagtgacctcacttgggttcagtgt |
10330726 |
T |
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| Q |
163 |
gatgcaccatgtataggtt |
181 |
Q |
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||||||||||||| ||||| |
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| T |
10330725 |
gatgcaccatgtaaaggtt |
10330707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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