View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1131_high_3 (Length: 325)

Name: NF1131_high_3
Description: NF1131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1131_high_3
NF1131_high_3
[»] chr5 (1 HSPs)
chr5 (58-325)||(26599947-26600214)
[»] chr3 (3 HSPs)
chr3 (7-54)||(51805610-51805657)
chr3 (148-203)||(26317889-26317944)
chr3 (145-182)||(26447655-26447692)
[»] chr8 (2 HSPs)
chr8 (145-197)||(24213800-24213854)
chr8 (145-181)||(12283696-12283732)
[»] chr1 (2 HSPs)
chr1 (144-195)||(8010078-8010129)
chr1 (145-197)||(19316023-19316075)
[»] chr6 (2 HSPs)
chr6 (146-203)||(32019145-32019202)
chr6 (145-197)||(5358609-5358661)
[»] chr4 (1 HSPs)
chr4 (9-54)||(20017409-20017454)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 58 - 325
Target Start/End: Complemental strand, 26600214 - 26599947
Alignment:
Q  58 gcttttgagaaagggtgcctcgagtttgagtcttagtttgttaacttattctttaaacaatgtaatattattctctaaagtttaaacgagaaatacttac 157  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  26600214 gcttttgagaaagggtggctcgagtttgagtcttagtttgttaacttattctttaaacaatgtaatattattctttaaagtttaaacgagaaatatttac 26600115  T
Q  158 ttggtcacaagatcaaatgcatagtgtttagacacacacaatgatgcagctcagtttacacagcagatggcataattgcttgcattttcttagaaacatg 257  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  26600114 ttggtcacaagaccaaatgcatagtgtttagacacacacaatgatgcagctcagtttacacagcaggtggtataattgcttgcattttcttagaaacatg 26600015  T
Q  258 tctttcaaaatctctcatattttcaaggaagtgaattattgtgttgatagaattgttaatactagatt 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26600014 tctttcaaaatctctcatattttcaaggaagtgaattattgtgttgatagaattgttaatactagatt 26599947  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 51805657 - 51805610
Alignment:
Q  7 aggtcaaattccaaaagaacttggattgttgaaaaacttgcaacagct 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51805657 aggtcaaattccaaaagaacttggattgttgaaaaacttgcaacagct 51805610  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 26317944 - 26317889
Alignment:
Q  148 aaatacttacttggtcacaagatcaaatgcatagtgtttagacacacacaatgatg 203  Q
    |||||||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  26317944 aaatacttacttggtcacaagaccgaatgcatagtgtttaggcacacacaatgatg 26317889  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 26447692 - 26447655
Alignment:
Q  145 gagaaatacttacttggtcacaagatcaaatgcatagt 182  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  26447692 gagaaatacttacttggtcacaagaccaaatgcatagt 26447655  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 24213854 - 24213800
Alignment:
Q  145 gagaaatacttacttggtc--acaagatcaaatgcatagtgtttagacacacaca 197  Q
    ||||||| |||||||||||  |||||| |||||||||||||||||||||||||||    
T  24213854 gagaaatgcttacttggtcttacaagaccaaatgcatagtgtttagacacacaca 24213800  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 12283696 - 12283732
Alignment:
Q  145 gagaaatacttacttggtcacaagatcaaatgcatag 181  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  12283696 gagaaatacttacttggtcacaagaccaaatgtatag 12283732  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 8010129 - 8010078
Alignment:
Q  144 cgagaaatacttacttggtcacaagatcaaatgcatagtgtttagacacaca 195  Q
    ||||||||||||| ||||||||||||  ||||||||||||||||| ||||||    
T  8010129 cgagaaatacttatttggtcacaagactaaatgcatagtgtttaggcacaca 8010078  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 19316023 - 19316075
Alignment:
Q  145 gagaaatacttacttggtcacaagatcaaatgcatagtgtttagacacacaca 197  Q
    |||||||||||| |||||||| ||| ||||||||| ||||||||||| |||||    
T  19316023 gagaaatacttaattggtcacgagaccaaatgcatggtgtttagacatacaca 19316075  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 32019202 - 32019145
Alignment:
Q  146 agaaatacttacttggtcacaagatcaaatgcatagtgtttagacacacacaatgatg 203  Q
    ||||||| |||| || |||||||| ||||||||||||| ||||  |||||||||||||    
T  32019202 agaaatatttacctgatcacaagaccaaatgcatagtgcttaggtacacacaatgatg 32019145  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 5358609 - 5358661
Alignment:
Q  145 gagaaatacttacttggtcacaagatcaaatgcatagtgtttagacacacaca 197  Q
    |||||||| ||| ||||||||||||||||||| ||| ||||||| || |||||    
T  5358609 gagaaatatttatttggtcacaagatcaaatgtataatgtttaggcatacaca 5358661  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 20017409 - 20017454
Alignment:
Q  9 gtcaaattccaaaagaacttggattgttgaaaaacttgcaacagct 54  Q
    ||||||||||   ||| |||||||||||||||||||||||||||||    
T  20017409 gtcaaattccttcagagcttggattgttgaaaaacttgcaacagct 20017454  T

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