View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1131_high_4 (Length: 324)
Name: NF1131_high_4
Description: NF1131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1131_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 22277530 - 22277748
Alignment:
| Q |
8 |
ccaacaatatcacaagtcaagagcaaatgatttgccgattccacatccccacatccagctagacaaagactcgcatcagcagcaataacatcacgccttg |
107 |
Q |
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| T |
22277530 |
ccaaaaatattacaagtcaagagcaaatgatttgccgattccatatccccacatccagctagacaaagactcgcatcagcagcaataacatcgcgccttg |
22277629 |
T |
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| Q |
108 |
ccaaattatctttagttagaagtctattttgatgaagccgccatgcaaaaactaaaacctttaaaggaacattcttatgccaaaccaagttggaaactgc |
207 |
Q |
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| T |
22277630 |
ccaaattatctttagttagaagtctattttgatgaagccgccatgcaaaaactaaaacctttaaaggaacattcttatgccaaaccaagttggaaactgc |
22277729 |
T |
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| Q |
208 |
agacgcttgctgcgattgc |
226 |
Q |
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| T |
22277730 |
agacgcttgttgcgattgc |
22277748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 7617231 - 7617111
Alignment:
| Q |
88 |
agcaataacatcacgccttgccaaattatctttagttagaagtctattttgatgaagccgccatgcaaaaactaaaacctttaaaggaacattcttatgc |
187 |
Q |
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| T |
7617231 |
agcaagaacaccgcgccttaccaaatcatctttagttggcaatatgtttcgaagaagacgccaagcaaaaattaagaccttcaaaggaacatccttatgc |
7617132 |
T |
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| Q |
188 |
caaaccaagttggaaactgca |
208 |
Q |
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| T |
7617131 |
caaaccaagtcggagactgca |
7617111 |
T |
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