View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1131_low_2 (Length: 455)
Name: NF1131_low_2
Description: NF1131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1131_low_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 16 - 455
Target Start/End: Complemental strand, 41475885 - 41475447
Alignment:
| Q |
16 |
atgtcccaaaaaacaattataccaaatactacaaaaagtttaacatgctacaaaaagaataaacaactttgtttaggtagtaagataaagcatgtgtcat |
115 |
Q |
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| T |
41475885 |
atgtcccaaaaaacaattataccaaatactacaaaaagtttaacatgctacaaaa-gaataaacaactttgtttaggtggtaagataaagcatgtgtcat |
41475787 |
T |
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| Q |
116 |
agggctttgttaacatggccaccttagtggctaaacagtgttattggggggctaggtgagactagagagagcaaaatgattagtttagccagggtgtagc |
215 |
Q |
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| T |
41475786 |
agggctttgttaacatggccaccttagtggctaaacagtgttattggggggctaggtgagactagagagagcaaaatgattagtttagccagggtgtagc |
41475687 |
T |
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| Q |
216 |
tgagagtgttgcttagagaagcatttactgtaagagaagttgtaatttctatggttattctatcagcatcgatcttctactaattcacattggcaaatat |
315 |
Q |
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| T |
41475686 |
tgagagtgttgcttagagaagcatttactgtaagagaagttgtaatttctatggttattctatcagcatcgatcttctactaattcacattggcaaatat |
41475587 |
T |
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| Q |
316 |
agtgttttgtcaaaggagggggagggctagacaacccataaagagctgaagaaatggaagcagatggctattgttaatatgactatatggcagtgtttga |
415 |
Q |
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| T |
41475586 |
agtgttttgtcaaaggagggggagggctagacaacccataaagagctgaagaaatggaagcagatggctattgttaatatgactatatggcagtgtttga |
41475487 |
T |
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| Q |
416 |
gctcttctatttggagcatggttgattgcagaagttcatt |
455 |
Q |
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| T |
41475486 |
gctcttctatttggagcatggttgattgcagaagttcatt |
41475447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 16 - 455
Target Start/End: Original strand, 41186502 - 41186943
Alignment:
| Q |
16 |
atgtcccaaaaaacaattataccaaatactacaaaaagtttaacatgctacaaaaagaataaacaactttgtttaggtagtaagataaagcatgtgtcat |
115 |
Q |
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| T |
41186502 |
atgtcccaaaaaacaattataccaaatactacaaaaagtttaacatgctacaaaa-gaataaacaactttgtttaggtagtaagataaagcatgtgtcat |
41186600 |
T |
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| Q |
116 |
agggctttgttaacatggccaccttagtggctaaacagtgttattggggggctaggtgagactagagagagcaaaatgattagtttagccagggtgtagc |
215 |
Q |
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| T |
41186601 |
agggctttgttaacatggccaccttagtggctaaacagtgttattggggggctaggtgagactagagagagcaaaatgattagtttagccagggtgtagc |
41186700 |
T |
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| Q |
216 |
tgagagtgttgcttagagaagcatttactgta---agagaagttgtaatttctatggttattctatcagcatcgatcttctactaattcacattggcaaa |
312 |
Q |
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||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| |
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| T |
41186701 |
tgagactgttgcttagagaagcatttaatgtagtaagagaagttgtaatttctatggttatactatcagcatcgagcttctactaatccacattggcaaa |
41186800 |
T |
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| Q |
313 |
tatagtgttttgtcaaaggagggggagggctagacaacccataaagagctgaagaaatggaagcagatggctattgttaatatgactatatggcagtgtt |
412 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41186801 |
tatagtgttttgtcataggagggggagggctagacaacctataaagagctgaagaaatggaagcagatggctattgttaatatgactatatggcagtgtt |
41186900 |
T |
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| Q |
413 |
tgagctcttctatttggagcatggttgattgcagaagttcatt |
455 |
Q |
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| T |
41186901 |
tgagctcttctatttggagcatggttgattgcagaagttcatt |
41186943 |
T |
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