View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1131_low_3 (Length: 441)

Name: NF1131_low_3
Description: NF1131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1131_low_3
NF1131_low_3
[»] chr5 (1 HSPs)
chr5 (20-393)||(39184807-39185182)
[»] chr1 (3 HSPs)
chr1 (311-384)||(42373538-42373611)
chr1 (307-371)||(19597952-19598016)
chr1 (309-377)||(41919898-41919966)
[»] chr2 (1 HSPs)
chr2 (302-377)||(31902961-31903036)
[»] chr8 (4 HSPs)
chr8 (309-371)||(34866640-34866702)
chr8 (304-377)||(9519052-9519125)
chr8 (317-377)||(10551752-10551812)
chr8 (309-377)||(34389590-34389658)
[»] chr7 (3 HSPs)
chr7 (309-371)||(38484991-38485053)
chr7 (302-371)||(3420242-3420311)
chr7 (309-377)||(38305676-38305744)
[»] chr4 (2 HSPs)
chr4 (303-371)||(16501182-16501250)
chr4 (309-377)||(30963879-30963947)
[»] chr6 (1 HSPs)
chr6 (309-351)||(12793553-12793595)
[»] chr3 (1 HSPs)
chr3 (307-377)||(17501810-17501880)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 39185182 - 39184807
Alignment:
Q  20 gggttgtttaagtttttgtgttactgtttggtggtgttgtcaccagctttccgacggccatacacggtgggtagtggtgctggttgcttggttttttg-- 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  39185182 gggttgtttaagtttttgtgttactgtttggtggtgttgtcaccagctttccgacggccatacacggtgggtagtggtgctggttgcttggttttttttt 39185083  T
Q  118 -gcggttttgggtatatatcgacnnnnnnnctctgggtgtctcacatgctttcaggtttggtactggttttggtgattttgttgctgagatcggcttcga 216  Q
     | |||||| |||||||||||||       ||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |    
T  39185082 tgtggttttaggtatatatcgactttttt-ctctgggtgtctcacgtgctttcacgttcggtactggttttggtgattttgttgctgagatcagcttcca 39184984  T
Q  217 ttgggtcagttccgcaggttaatggggttggttgtttactccggcgacatacgttttctccatgtcaccggcagctgcatttctctgatttaggttgtga 316  Q
    || ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39184983 ttcggtcagttccgcaggttcatggggttggttgtttactccggcgacatatgttttctccatgtcaccggcagctgcatttctctgatttaggttgtga 39184884  T
Q  317 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttctgtggtgctg 393  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |||||    
T  39184883 ttctgcttcaaactggcgtcgttgcctatgttttgtagttgtgtttcgtcttcctatatatatgttttgtgttgctg 39184807  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 311 - 384
Target Start/End: Original strand, 42373538 - 42373611
Alignment:
Q  311 ttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttct 384  Q
    ||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||| ||| ||||||    
T  42373538 ttgtgattccgcttcaaaccggtgtcgttgcccgtgttttgaagttgtgtttcgtcttcctatcgatctgttct 42373611  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 19597952 - 19598016
Alignment:
Q  307 taggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 371  Q
    ||||||||| |||| ||||| || ||||||||||||| |||| ||| |||| ||||| |||||||    
T  19597952 taggttgtgtttccacttcagaccggcgtcgttgcccgtgttctgttgttgggtttcatcttcct 19598016  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 41919898 - 41919966
Alignment:
Q  309 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 377  Q
    ||||||| |||||||||||||  |||||||||||| |||||||| || |  |||| ||||||| |||||    
T  41919898 ggttgtggttccgcttcaaaccagcgtcgttgcccgtgttttgttgtgggatttcatcttcctctagat 41919966  T

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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 302 - 377
Target Start/End: Complemental strand, 31903036 - 31902961
Alignment:
Q  302 tgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 377  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||| |||||||| |||| ||||||||||||| |||||    
T  31903036 tgatctaggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgtcttcctctagat 31902961  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 371
Target Start/End: Complemental strand, 34866702 - 34866640
Alignment:
Q  309 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 371  Q
    ||||||| ||||||||||||| ||||||| ||||| |||||||| ||||  ||||||||||||    
T  34866702 ggttgtggttccgcttcaaaccggcgtcgctgcccgtgttttgttgttggatttcgtcttcct 34866640  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 9519052 - 9519125
Alignment:
Q  304 atttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 377  Q
    |||| ||||||| | |||||||||||  |||||| ||||| |||||||| |||| |||||||||| || |||||    
T  9519052 atttgggttgtgttcccgcttcaaaccagcgtcgctgcccgtgttttgttgttgggtttcgtctttctctagat 9519125  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 10551752 - 10551812
Alignment:
Q  317 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 377  Q
    ||||||||||||  ||||||| ||||| || ||||| |||| ||||||||||||| |||||    
T  10551752 ttccgcttcaaatcggcgtcgctgcccgtgctttgttgttgggtttcgtcttcctctagat 10551812  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 34389658 - 34389590
Alignment:
Q  309 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 377  Q
    ||||||| ||||||||||||| ||||||| ||||| |||||||| || |  ||||||| |||| |||||    
T  34389658 ggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgtggaatttcgtcctcctctagat 34389590  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 371
Target Start/End: Original strand, 38484991 - 38485053
Alignment:
Q  309 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 371  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||| ||   |||||||||||||    
T  38484991 ggttgtgtttccgcttcaaaccggcgtcgctgcccatgttttgttgtcaggtttcgtcttcct 38485053  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 3420311 - 3420242
Alignment:
Q  302 tgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 371  Q
    |||| ||||||||| ||||||||| ||| ||||||| ||| | |||||||| |||  |||||||||||||    
T  3420311 tgatctaggttgtggttccgcttcgaaccggcgtcgctgctcgtgttttgttgtttggtttcgtcttcct 3420242  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 38305676 - 38305744
Alignment:
Q  309 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 377  Q
    ||||||| ||||||||||||| ||||| | ||||  |||||||| ||||  |||||||||||| |||||    
T  38305676 ggttgtggttccgcttcaaaccggcgttgctgcctgtgttttgttgttggatttcgtcttcctctagat 38305744  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 16501182 - 16501250
Alignment:
Q  303 gatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 371  Q
    ||||| |||||||||||| |||||||| ||||||| |||||||||| ||| ||||  ||| ||||||||    
T  16501182 gatttgggttgtgattccacttcaaaccggcgtcgctgcccatgttgtgttgttggttttagtcttcct 16501250  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 30963879 - 30963947
Alignment:
Q  309 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 377  Q
    ||||||| |||| |||||||| ||||||| ||||| |||||||| ||||  |||||||||||| |||||    
T  30963879 ggttgtggttccacttcaaaccggcgtcgatgcccgtgttttgtggttggatttcgtcttcctctagat 30963947  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 12793553 - 12793595
Alignment:
Q  309 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttg 351  Q
    ||||||| || |||||||||||||||||||||||| |||||||    
T  12793553 ggttgtgttttcgcttcaaactggcgtcgttgcccgtgttttg 12793595  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 17501880 - 17501810
Alignment:
Q  307 taggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 377  Q
    ||||||||| ||||||||||||||| |||| ||| || |||||||| |||   |||||||||||| |||||    
T  17501880 taggttgtgtttccgcttcaaactgacgtcattgtccgtgttttgttgttagatttcgtcttcctctagat 17501810  T

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