View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1131_low_7 (Length: 293)
Name: NF1131_low_7
Description: NF1131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1131_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 24085498 - 24085322
Alignment:
| Q |
46 |
tgcgtgcgagtcggatgattcagatattgtgtagtattattcagatatggctgtgaagtgcgcgatgtcctgagttatataaatatatgtatatattttt |
145 |
Q |
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| T |
24085498 |
tgcgtgcgagtcggatgattcagatattgtgtagtattattcagatatggctgtgaagtgcgcgatgtcccgagttatataaatatatgtatatattttt |
24085399 |
T |
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| Q |
146 |
ggaattggaccgtacctttagcttggcatgaatatttaaggatgtaatctatctattaaagtaaagaagggacatat |
222 |
Q |
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| T |
24085398 |
ggaattggaccgtacctttagcttggcatgaatatttaaggatgtaatctatctattaaagtaatgaagggacatat |
24085322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 24089243 - 24089067
Alignment:
| Q |
46 |
tgcgtgcgagtcggatgattcagatattgtgtagtattattcagatatggctgtgaagtgcgcgatgtcctgagttatataaatatatgtatatattttt |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24089243 |
tgcgtgcgagtcggatgattcagatattgtgtagtattattcagatatggctgtgaagtgcgcgatgtcctgagttatataaatatatgtatatattttt |
24089144 |
T |
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| Q |
146 |
ggaattggaccgtacctttagcttggcatgaatatttaaggatgtaatctatctattaaagtaaagaagggacatat |
222 |
Q |
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|||||||| ||||||| || ||||||| |||||| ||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
24089143 |
ggaattgggccgtaccctttgcttggcttgaataattaagaatgtaatctatctattaaagtaacgaagggacatat |
24089067 |
T |
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