View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11320_low_3 (Length: 272)
Name: NF11320_low_3
Description: NF11320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11320_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 29460915 - 29461165
Alignment:
| Q |
17 |
acattcattgatatcaaatttgtgtgactgatcaaaagcatggtgtatatgtaagcacatgtaaccttcacattaatttcctttacttgccacctatatg |
116 |
Q |
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| T |
29460915 |
acattcattgatatcaaatttgtgtgactgatcaaaagtatggtgtatatgtaagcacatgtaaccttcacattaatttcctttacttgccacctatatg |
29461014 |
T |
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| Q |
117 |
cttctatccgttcatacccaagacattaaactctcccatcttttctctctcttcataatttttccatgtaactgtttgattaggtacagcattaatggtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29461015 |
cttctatccgttcatacccaagacattaaactctcccatcttttctctctcttcataatttttccatgtaactgtttgattaggtacagcattaatggtt |
29461114 |
T |
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| Q |
217 |
agttgttttgcatttgttgtacatccattctagatttcttttcttctctct |
267 |
Q |
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| T |
29461115 |
agttgttttgcatttgttgtacatccattctagatttcttttcttatctct |
29461165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 29425850 - 29425890
Alignment:
| Q |
145 |
aactctcccatcttttctctctcttcataatttttccatgt |
185 |
Q |
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| T |
29425850 |
aactctcccatctactctatctcttcataatttttccatgt |
29425890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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