View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11320_low_5 (Length: 236)
Name: NF11320_low_5
Description: NF11320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11320_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 6839287 - 6839484
Alignment:
| Q |
23 |
ctacaaccctaaaggcatgttcatcaagaatgacaaagtttgttacagctttcctacactctattgcattgtacctttggtttgcagcaactagcaaacc |
122 |
Q |
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| T |
6839287 |
ctacaaccctaaaggcatgttcatcaaggatgacaaagtttgttaaagctttcctacactctattgcattgtacctttggtttgcagcaactagcaaacc |
6839386 |
T |
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| Q |
123 |
accctttccacttacaaggtttgattgcctagggtcttttaacatgttagagggtttttgaagacaaattttagtgtgtgctaacatgctggatgtcc |
220 |
Q |
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| T |
6839387 |
accctttccacttacaaggtttgattgcctagtgtcttttaacatgttagagggtttttgaagacaaattttagtgtgtgctaacatgctagatgtcc |
6839484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 15999514 - 15999317
Alignment:
| Q |
23 |
ctacaaccctaaaggcatgttcatcaagaatgacaaagtttgttacagctttcctacactctattgcattgtacctttggtttgcagcaactagcaaacc |
122 |
Q |
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| T |
15999514 |
ctacaaccctaaaggcatgttcatcaaggatgacaaactttgttatagctttcctacactctattgcattgtacctttggtttgcagcaactagcaaacc |
15999415 |
T |
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| Q |
123 |
accctttccacttacaaggtttgattgcctagggtcttttaacatgttagagggtttttgaagacaaattttagtgtgtgctaacatgctggatgtcc |
220 |
Q |
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| T |
15999414 |
accctttccacttacaaggtttgattgcctagggtattttaacatgttagagggtttttgaagacaaattttagtgtgtgctaacatgctggatgtcc |
15999317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 31 - 220
Target Start/End: Complemental strand, 7285215 - 7285023
Alignment:
| Q |
31 |
ctaaaggcatgttcatcaagaatgacaaagtttgttacagctttcctacactctattgcattgtacctttggtttgcagcaactagcaaaccaccctttc |
130 |
Q |
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|||| |||||| |||| ||| |||| |||||||||||| |||||||||||||| || ||| ||||||||||||||||| |||||| ||||||||||||| |
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| T |
7285215 |
ctaagggcatgctcataaaggatgaaaaagtttgttacgactttcctacactcttttacatcgtacctttggtttgcaggaactagaaaaccaccctttc |
7285116 |
T |
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| Q |
131 |
cacttac---aaggtttgattgcctagggtcttttaacatgttagagggtttttgaagacaaattttagtgtgtgctaacatgctggatgtcc |
220 |
Q |
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| T |
7285115 |
tacctactacaaggtttaattgcctagggtcttttaatatgttagaaggtttttgaagacaaactttagagtgtgctaacatgctggatgtcc |
7285023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 170
Target Start/End: Complemental strand, 13935728 - 13935594
Alignment:
| Q |
36 |
ggcatgttcatcaagaatgacaaagtttgttacagctttcctacactctattgcattgtacctttggtttgcagcaactagcaaaccaccctttccactt |
135 |
Q |
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| T |
13935728 |
ggcatgttcgtcaaggataacaaagttggttacgacatcactataatcttttgcattgtacctttggctagctgaaactagaaaaccacccttcccattt |
13935629 |
T |
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| Q |
136 |
acaaggtttgattgcctagggtcttttaacatgtt |
170 |
Q |
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| T |
13935628 |
ataagatttgtttgcctagggtcatttagcatgtt |
13935594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 13307099 - 13306960
Alignment:
| Q |
31 |
ctaaaggcatgttcatcaagaatgacaaagtttgttacagctttcctacactctattgcattgtacctttggtttgcagcaactagcaaaccaccctttc |
130 |
Q |
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||||| |||||||| ||||| || |||||||| |||||||| | |||||| ||| ||||||||||||||||| | || | |||||| ||||||||||| | |
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| T |
13307099 |
ctaaaagcatgttcgtcaaggataacaaagttggttacagcatccctacaatcttttgcattgtacctttggctagctgaaactagaaaaccacccttcc |
13307000 |
T |
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| Q |
131 |
cacttacaaggtttgattgcctagggtcttttaacatgtt |
170 |
Q |
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|| ||| ||| ||| |||||||||||| |||| |||||| |
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| T |
13306999 |
catttataagatttttttgcctagggtcatttagcatgtt |
13306960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 14596769 - 14596901
Alignment:
| Q |
23 |
ctacaaccctaaaggcatgttcatcaagaatgacaaagtttgttacagctttcctacactctattgcattgtacctttggtttgcagcaactagcaaacc |
122 |
Q |
| |
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||||||| ||||| |||||||| ||||| || |||||||| ||||| || | |||||| ||| ||||||||||||||||| | || | |||||| ||||| |
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| T |
14596769 |
ctacaactctaaaagcatgttcgtcaaggataacaaagttggttacggcatccctacagtcttttgcattgtacctttggctagctgaaactagaaaacc |
14596868 |
T |
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| Q |
123 |
accctttccacttacaaggtttgattgcctagg |
155 |
Q |
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| T |
14596869 |
acccttcccatttataagatttgtttgcctagg |
14596901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 13786857 - 13786762
Alignment:
| Q |
75 |
cctacactctattgcattgtacctttggtttgcagcaactagcaaaccaccctttccacttacaaggtttgattgcctagggtcttttaacatgtt |
170 |
Q |
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|||||| ||| ||||||||||||||||| | | | |||||| ||| ||||||| ||| ||| ||| |||| |||||||||||| |||| |||||| |
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| T |
13786857 |
cctacaatcttttgcattgtacctttggctaactgaaactagaaaatcacccttcccatttataagatttgtttgcctagggtcatttagcatgtt |
13786762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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