View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11320_low_6 (Length: 231)
Name: NF11320_low_6
Description: NF11320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11320_low_6 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 107524 - 107722
Alignment:
| Q |
18 |
agatcaaaccgtcgacgaacttgaatttgttctttccgatcaaagccatgtgcatcaatcatgaccatgaatggtaattgctgggagtgaagagtttcgt |
117 |
Q |
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| T |
107524 |
agatcgaaccgtcgacgaacttgaatttgttctttccgatcaaagccatgtgcatcaatcatgaccatgaatggtaattgctgggagtgaagagtttcgt |
107623 |
T |
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| Q |
118 |
aacgagagaaattgctggattttcgttaggatgaacatagtatggacttgcagtgttcaacgctaga-ctaacaccggcggcggcgtcaccgagctatt |
215 |
Q |
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| T |
107624 |
aacaagagaaattgctggatttttgttaggatgaacatagtacggacttgcagtgttcaacgctagatctaacaccggcggcggtggcaccgagctatt |
107722 |
T |
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Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 21949224 - 21949066
Alignment:
| Q |
24 |
aaccgtcgacgaacttgaatttgttctttccgatcaaagccatgtgcatcaatcatgaccatgaatggtaattgctgggag-tgaagagtttcgtaacga |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||| || |||||||| ||||||||||||||||| | |||||||||||||||| |
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| T |
21949224 |
aaccgtcgacgaacttgaatttgttctttccgatcaaagccttgcgcatcactcttgaccatggatggtaattgctgggagttaaagagtttcgtaacga |
21949125 |
T |
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| Q |
123 |
gagaaattgctggattttcgttaggatgaacatagtatggacttgcagtgttcaacgct |
181 |
Q |
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| T |
21949124 |
gagaactttctggattttcgttaggatgaacatagtacggactagcagtgttcaacgct |
21949066 |
T |
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