View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11321_high_1 (Length: 617)

Name: NF11321_high_1
Description: NF11321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11321_high_1
NF11321_high_1
[»] chr7 (3 HSPs)
chr7 (318-587)||(47838213-47838482)
chr7 (19-56)||(44416840-44416877)
chr7 (19-55)||(31513444-31513480)
[»] chr6 (4 HSPs)
chr6 (19-56)||(21293583-21293620)
chr6 (20-53)||(13743130-13743163)
chr6 (20-53)||(13748630-13748663)
chr6 (19-55)||(3213557-3213593)
[»] chr2 (1 HSPs)
chr2 (19-57)||(4764631-4764669)
[»] chr5 (2 HSPs)
chr5 (19-56)||(5257152-5257189)
chr5 (19-55)||(25914903-25914939)
[»] chr1 (2 HSPs)
chr1 (19-60)||(2497464-2497505)
chr1 (19-56)||(4401485-4401522)
[»] chr8 (1 HSPs)
chr8 (19-55)||(1375699-1375735)
[»] chr4 (1 HSPs)
chr4 (19-55)||(27864721-27864757)
[»] chr3 (2 HSPs)
chr3 (19-55)||(1078375-1078411)
chr3 (19-55)||(36150287-36150323)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 318 - 587
Target Start/End: Original strand, 47838213 - 47838482
Alignment:
Q  318 ttaatatatacattgcatcttgattccagttttgattttttcacttatttattttaaaagatgaaattctaactgttaatatgttttataaaagataaag 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  47838213 ttaatatatacattgcatcttgattccagttttgattttttcacttatttattttaaaagatgaaattctaacagttaatatgttttataaaagataaag 47838312  T
Q  418 agttgaattttataagctttaaaatgggaagagccagccaacccaacaatcttcaaaagtaaagcttaaaacaaattttgataatgtaatcttattttgt 517  Q
    ||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47838313 agttgaattttataagctttaaaatgggaagagtcagccaaccc-ataatcttcaaaagtaaagcttaaaacaaattttgataatgtgatcttattttgt 47838411  T
Q  518 cagcattagacttttttgcttaaaaaatttagttaa-tttttttggcagagctaaagagacggttttggta 587  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  47838412 cagcattagacttttttgcttaaaaaatttagttaattttttttggcagacctaaagagacggttttggta 47838482  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 44416877 - 44416840
Alignment:
Q  19 gtattgccacataaggtggtacatgtatcaccactcta 56  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  44416877 gtattgccacatgaggtggtacatgtatcatcactcta 44416840  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 31513444 - 31513480
Alignment:
Q  19 gtattgccacataaggtggtacatgtatcaccactct 55  Q
    ||||||||||||||||  |||||||||||||||||||    
T  31513444 gtattgccacataagggtgtacatgtatcaccactct 31513480  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 21293620 - 21293583
Alignment:
Q  19 gtattgccacataaggtggtacatgtatcaccactcta 56  Q
    |||||||||||| |||||||||||||||||||||||||    
T  21293620 gtattgccacatgaggtggtacatgtatcaccactcta 21293583  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 13743163 - 13743130
Alignment:
Q  20 tattgccacataaggtggtacatgtatcaccact 53  Q
    |||||||||||| |||||||||||||||||||||    
T  13743163 tattgccacatagggtggtacatgtatcaccact 13743130  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 13748663 - 13748630
Alignment:
Q  20 tattgccacataaggtggtacatgtatcaccact 53  Q
    |||||||||||| |||||||||||||||||||||    
T  13748663 tattgccacatagggtggtacatgtatcaccact 13748630  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 3213557 - 3213593
Alignment:
Q  19 gtattgccacataaggtggtacatgtatcaccactct 55  Q
    ||||||||||||  |||||||||||||||||||||||    
T  3213557 gtattgccacatggggtggtacatgtatcaccactct 3213593  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 4764669 - 4764631
Alignment:
Q  19 gtattgccacataaggtggtacatgtatcaccactctat 57  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  4764669 gtattgccacatgaggtggtacatgtatcatcactctat 4764631  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 5257152 - 5257189
Alignment:
Q  19 gtattgccacataaggtggtacatgtatcaccactcta 56  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  5257152 gtattgccacatggggtggtacatgtatcaccactcta 5257189  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 25914939 - 25914903
Alignment:
Q  19 gtattgccacataaggtggtacatgtatcaccactct 55  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  25914939 gtattgccacatgaggtggtacatgtatcatcactct 25914903  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 2497505 - 2497464
Alignment:
Q  19 gtattgccacataaggtggtacatgtatcaccactctattat 60  Q
    ||||||||||||   |||||||||||||||||||||||||||    
T  2497505 gtattgccacatggtgtggtacatgtatcaccactctattat 2497464  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 4401485 - 4401522
Alignment:
Q  19 gtattgccacataaggtggtacatgtatcaccactcta 56  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  4401485 gtattgccacatagggtggtacatgtatcatcactcta 4401522  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 1375699 - 1375735
Alignment:
Q  19 gtattgccacataaggtggtacatgtatcaccactct 55  Q
    |||||| |||||| |||||||||||||||||||||||    
T  1375699 gtattgtcacatagggtggtacatgtatcaccactct 1375735  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 27864721 - 27864757
Alignment:
Q  19 gtattgccacataaggtggtacatgtatcaccactct 55  Q
    ||||||||||||  |||||||||||||||||||||||    
T  27864721 gtattgccacatggggtggtacatgtatcaccactct 27864757  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 1078375 - 1078411
Alignment:
Q  19 gtattgccacataaggtggtacatgtatcaccactct 55  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  1078375 gtattgccacatgaggtggtacatgtatcatcactct 1078411  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 36150287 - 36150323
Alignment:
Q  19 gtattgccacataaggtggtacatgtatcaccactct 55  Q
    ||||||||||||  |||||||||||||||||||||||    
T  36150287 gtattgccacatggggtggtacatgtatcaccactct 36150323  T

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