View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11321_high_3 (Length: 546)
Name: NF11321_high_3
Description: NF11321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11321_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 21 - 531
Target Start/End: Original strand, 27801193 - 27801704
Alignment:
| Q |
21 |
acactttccattcttttggccggtagatataagcacattgtgaaccctcatgaggttggtttgtcacaaactttagttgattagatcttcannnnnnnnn |
120 |
Q |
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| T |
27801193 |
acactttccattcttttggccggtagatataagcacattgtgaaccctcatgaggttggtttgtcacaagctttagttgatcagatcttcatttttattt |
27801292 |
T |
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| Q |
121 |
nnnnnnngctttctgttaagtaatcattattgttcaattgacaaatatgcagagatttgggataataatgaggggattacaggatgcccttatagtttct |
220 |
Q |
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| T |
27801293 |
ttgttttgctttctgttaagtaatcattattgttcaattgacaaatatgcagagatttgggataataatgaggggattacaggatgcccttatagtttct |
27801392 |
T |
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| Q |
221 |
tcatctctccaaattattcttggctttagtggccttttggcactatgtagttgggttttcaaatctgtccggttttaccattttttccaatagaaaataa |
320 |
Q |
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| T |
27801393 |
tcatctctccaaattattcttggctttagtggccttttggcactatgtagttgggttttcaaatctgtccgattttaccattttttccaatagaaaataa |
27801492 |
T |
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| Q |
321 |
ttttacaccaacgttgcattacacgcttttacactccatagtttttaatcacttttctattttgtgcagtgagatgatgagtccattgacaagctgttct |
420 |
Q |
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| T |
27801493 |
ttttacaccaacgttgcattacacgcttttacactccatagtttttaatcacttttctattttgtgcagtgagatgatgagtccattgacaagctgttct |
27801592 |
T |
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| Q |
421 |
tgaatcgccaacttaccctatgtgctactggtactatattcagacgtgacaatgaagccgttcc-tcagctggtgagaagtttcttctcctcattccttg |
519 |
Q |
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| T |
27801593 |
tgaatcgccaacttaccctatgtgctactggtactatattcagacgtgacaatgaagccgttccttcagctggtgagaagtttcttctcctcattccttg |
27801692 |
T |
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| Q |
520 |
gaatatcctatg |
531 |
Q |
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| T |
27801693 |
gaatatcctatg |
27801704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 521
Target Start/End: Original strand, 27770799 - 27770861
Alignment:
| Q |
459 |
ttcagacgtgacaatgaagccgttcctcagctggtgagaagtttcttctcctcattccttgga |
521 |
Q |
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||||||| | |||||||| ||||| |||||||||||||||||| |||| | |||||||||||| |
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| T |
27770799 |
ttcagacataacaatgaatccgttgctcagctggtgagaagttgcttcacatcattccttgga |
27770861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 25 - 257
Target Start/End: Complemental strand, 26475066 - 26474834
Alignment:
| Q |
25 |
tttccattcttttggccggtagatataagcacattgtgaaccctcatgaggttggtttgtcacaaactttagttgattagatcttcannnnnnnnnnnnn |
124 |
Q |
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|||| ||| ||||||| |||||||||| |||||||||| ||||||||||||||||| || |||| || ||||||||| ||||||| |
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| T |
26475066 |
tttcaattattttggctggtagatatagtgacattgtgaatcctcatgaggttggtttctcgcaaatttaagttgattatatcttcatttttatttttgt |
26474967 |
T |
|
| Q |
125 |
nnngctttctgttaagtaatcattattgttcaattgacaaatatgcagagatttgggataataatgaggggattacaggatgcccttatagtttcttcat |
224 |
Q |
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| T |
26474966 |
tttgttttctattatgtaatcattgttgtctaattgacaaatatgcagaaatttgagaagataatgaggggaacacagggtgcccttatagttgcttcaa |
26474867 |
T |
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| Q |
225 |
ctctccaaattattcttggctttagtggccttt |
257 |
Q |
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| || |||||| |||||||||||||||| |||| |
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| T |
26474866 |
cacttcaaattgttcttggctttagtggacttt |
26474834 |
T |
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