View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11321_high_4 (Length: 458)
Name: NF11321_high_4
Description: NF11321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11321_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 25617132 - 25617480
Alignment:
| Q |
1 |
caaacctctagctctatagatgcattcattactaaattaaacagtttcaattttaaaaataattttattannnnnnncatatataattctgatgtcttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25617132 |
caaacctctagctctatagatgcattcattactaaattaaacggtttcaattttaaaagtaattttattatttttttcatatataattctgatgtcttga |
25617231 |
T |
|
| Q |
101 |
ctacacctaacatgcggtagtgaattgtttgatcaaaattcttattggcttataaagttcataatttcgacaatagtttctnnnnnnnnctttgcttcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25617232 |
ctacacctaacatgcggtagtgaatcgtttgatcaaaattcttattggcttataaggttcataatttcgacaatagtttctagaaaaaactttgcttcaa |
25617331 |
T |
|
| Q |
201 |
ttttttaaacatgacatgttaaaatatgttttgtttgatctcagttgagcgataacaagcttacttatagcgtgtatattcatggactaactgcaatcaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||||||||||| ||||||| |
|
|
| T |
25617332 |
ttttttaaacatgacatgttaaaatatgttttgtttgatctcagtcgagcgataacaagctta--ta----gtgtatattgatggactaacttcaatcaa |
25617425 |
T |
|
| Q |
301 |
agacattttttgtgttaacactacttctctttgagaaaagtgattctaataattt |
355 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
25617426 |
agacattttttgtgttaacactacttttctttgagaaaaatgatattaataattt |
25617480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 122 - 364
Target Start/End: Original strand, 25617965 - 25618206
Alignment:
| Q |
122 |
gaattgtttgatcaaaattcttattggcttataaagttcataatttcgacaatagtttctnnnnnnnnctttgcttcaattttttaaacatgacatgtta |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| ||| |||||||||||||||| ||||||||||| |
|
|
| T |
25617965 |
gaattgtttgatcaaaattcttattggcttataaagttcatattatcgacaatgctttctagaaaaaacttcgcttcaattttttaaatatgacatgtta |
25618064 |
T |
|
| Q |
222 |
aaatatgttttgtttgatctcagttgagcgataacaagcttacttatagcgtgtatattcatggactaactgcaatcaaagacattttttgtgttaacac |
321 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||||||| |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25618065 |
aaatatgttctgtttaatctcagtcgagcgataacaaacttacttatagc--gtatattcatgaactaacttcaatcaaagacattttttgtgttaacac |
25618162 |
T |
|
| Q |
322 |
tac-ttctctttgagaaaagtgattctaataatttagaattcag |
364 |
Q |
| |
|
||| || | ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25618163 |
tactttttttttgagaaaagtgtttctaataatttagaattcag |
25618206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 25611664 - 25611483
Alignment:
| Q |
1 |
caaacctctagctctatagatgcattcattactaaattaaacagtttcaattttaaaaataattttattannnnnnn-catatataattctgatgtcttg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| ||| |
|
|
| T |
25611664 |
caaacctctagctctatagatgcattcattactaaattaaacagtttcaattttaaaagtaattttattattttttttcacatataattctgatgtgttg |
25611565 |
T |
|
| Q |
100 |
actacacctaacatgcggtagtgaattgtttgatcaaaattcttattggcttataaagttcataatttcgacaatagtttct |
181 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25611564 |
actacacctaacatacggcagtgaattgtttgatcaaaattcttattggcttataaagttcataatttcgacaatagtttct |
25611483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 25617900 - 25617955
Alignment:
| Q |
381 |
tggactactatttttctaaaatcaattagtttattttatattagattttcttcctc |
436 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25617900 |
tggaccactatttctctaaaatcaattagtttattctatattagattttcttcctc |
25617955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 25618571 - 25618626
Alignment:
| Q |
381 |
tggactactatttttctaaaatcaattagtttattttatattagattttcttcctc |
436 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25618571 |
tggaccactatttctctaaaatcaattagtttattctatattagattttcttcctc |
25618626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University