View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11321_high_5 (Length: 364)
Name: NF11321_high_5
Description: NF11321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11321_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 34409517 - 34409173
Alignment:
| Q |
1 |
aatagagttgaagctggggcactgacagagaacaaagtttacagatgcaaagataacaatccaataggaagttctaatttttgtacatgttgggcatata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34409517 |
aatagagttgaagctggggcactgacagagaacaaagtttacagatgcaaagataacaatccaataggaagttctaatttttgtacatgttgggcatata |
34409418 |
T |
|
| Q |
101 |
gattcttgaaccttcttcaatgatttgcctccagtaaccatataagcaatacatgtaccaacctcaacgagtagttgttgtggaacaatgatatatagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34409417 |
gattcttgaaccttcttcaatgatttgcctccagtaaccatataagcaatacatgtaccaacctcaacgagtagttgttgtggaacaatgatatatagac |
34409318 |
T |
|
| Q |
201 |
ccaattttggtccaaaagcatgttgaccaagctcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgccatagagtgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34409317 |
ccaattttggtccaaaagcatgttgaccaagctcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgccatagagtgaa |
34409218 |
T |
|
| Q |
301 |
caatgtgattatccatgacattatcaggataactgaacccggacc |
345 |
Q |
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| T |
34409217 |
caatgtgattatccatgacattatcaggataactgaacccggacc |
34409173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 232 - 318
Target Start/End: Complemental strand, 43853220 - 43853134
Alignment:
| Q |
232 |
ctcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgccatagagtgaacaatgtgattatccatga |
318 |
Q |
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| T |
43853220 |
ctcatggtacctatcaaaccgttttcctggaaccatttcatgcatttcaaccatttgccatagagtgtagagggtgattatccatga |
43853134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 318
Target Start/End: Original strand, 7979381 - 7979508
Alignment:
| Q |
191 |
atatatagacccaattttggtccaaaagcatgttgaccaagctcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgcc |
290 |
Q |
| |
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||||| ||||| |||||| ||||||||||||||||| | ||||| || || ||||| | | |||| || |||||||||||||| ||||||||||||| |
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| T |
7979381 |
atataaagacctaattttttcccaaaagcatgttgacctaattcatggtatctatcaaagcgttttcccggaaccatttcatgcatctcaaccatttgcc |
7979480 |
T |
|
| Q |
291 |
atagagtgaacaatgtgattatccatga |
318 |
Q |
| |
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| || ||| | |||||||| |||||||| |
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| T |
7979481 |
aaagtgtgtagaatgtgatgatccatga |
7979508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 318
Target Start/End: Original strand, 14198760 - 14198905
Alignment:
| Q |
173 |
agttgttgtggaacaatgatatatagacccaattttggtccaaaagcatgttgaccaagctcatgatacctgtcaaatcttgttcctggcaccatttcat |
272 |
Q |
| |
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||||||||||| |||| ||||| |||||||| ||| |||||||||| |||||| || |||||||| || || || | | | || || |||||||||| |
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| T |
14198760 |
agttgttgtggcacaacaatatacagacccaacttttcaccaaaagcatattgacccagttcatgatatctatcgaaacgtttcccgggtaccatttcat |
14198859 |
T |
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| Q |
273 |
gcatttcaaccatttgccatagagtgaacaatgtgattatccatga |
318 |
Q |
| |
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| T |
14198860 |
gcatctcaaccatttgccataacgtgtataatgtgatgaaccatga |
14198905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 38827385 - 38827460
Alignment:
| Q |
223 |
ttgaccaagctcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgccatagagtg |
298 |
Q |
| |
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|||||| | |||||||||||| || ||||| |||| || || ||||||||||| |||||||||||||||| |||| |
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| T |
38827385 |
ttgacccaactcatgatacctatccaatctctttccgggaactatttcatgcatctcaaccatttgccatatagtg |
38827460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 306
Target Start/End: Original strand, 42986374 - 42986447
Alignment:
| Q |
233 |
tcatgatacctgtcaaatcttgttcctggcaccatttcatgcatttcaaccatttgccatagagtgaacaatgt |
306 |
Q |
| |
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||||||||| ||||||||||| |||||| || |||||||||||||| |||||||||| |||| ||||||| |
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| T |
42986374 |
tcatgatacttgtcaaatctttttcctgatacggattcatgcatttcaatcatttgccatgcagtgtacaatgt |
42986447 |
T |
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