View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11321_low_1 (Length: 646)

Name: NF11321_low_1
Description: NF11321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11321_low_1
NF11321_low_1
[»] chr7 (8 HSPs)
chr7 (14-328)||(22782370-22782684)
chr7 (336-632)||(22782040-22782340)
chr7 (21-257)||(22778317-22778553)
chr7 (14-234)||(22774961-22775181)
chr7 (14-235)||(22765140-22765361)
chr7 (23-281)||(16085070-16085328)
chr7 (21-198)||(23278396-23278573)
chr7 (14-133)||(22770263-22770382)
[»] scaffold0370 (2 HSPs)
scaffold0370 (534-595)||(9028-9089)
scaffold0370 (534-595)||(14318-14379)
[»] chr2 (1 HSPs)
chr2 (538-613)||(8821847-8821922)
[»] chr1 (1 HSPs)
chr1 (536-617)||(2883066-2883147)


Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 14 - 328
Target Start/End: Complemental strand, 22782684 - 22782370
Alignment:
Q  14 agagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatg 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22782684 agagcagtgacaaataagaacaagagaaggacttctaatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatg 22782585  T
Q  114 ctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22782584 ctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaag 22782485  T
Q  214 gataaaggaacaagtaatagagaaataaaaaatcaaagaaaatgcccagtttgagaaaatgaggaaagtgatggagattatgtggttttctccttttaat 313  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22782484 gataaaggaacaagtaatagagaaataaaaaataaaagaaaatggacagtttgagaaaatgaggaaagggatggagattatgtggttttctccttttaat 22782385  T
Q  314 aatgcatattttctg 328  Q
    |||||||||||||||    
T  22782384 aatgcatattttctg 22782370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 336 - 632
Target Start/End: Complemental strand, 22782340 - 22782040
Alignment:
Q  336 atatttggtatgtcttgattttccccataaaatctatacttgtattctctatatttaaaccagtcatagattgttaaataaagcatatgtgttagttaca 435  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22782340 atatttggtatgtcttgatttcccccctaaaatctatacttgtattctctatatttaaaccagtcatagattgttaaataaaacatatgtgttagttaca 22782241  T
Q  436 atgcatgaaaaagtatt----taccatgtaactattgcgtactaggcaaacgacgtgatctgcaatgcttaatcattcatttgactagtttcgcaagtag 531  Q
    |||||||||||||||||    |||  |||||||||||||||||||  ||||||| |||||| |||||||||||| |||||| |||||||||| |||||||    
T  22782240 atgcatgaaaaagtattgacgtacggtgtaactattgcgtactagctaaacgacatgatctacaatgcttaatccttcattcgactagtttcacaagtag 22782141  T
Q  532 tccatgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatccattgacaaggtctttggtgcatatc 631  Q
    | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22782140 tgcatgataactcccatcctagtgagattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatctattgacaaggtctttggtgcatatc 22782041  T
Q  632 t 632  Q
    |    
T  22782040 t 22782040  T

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Target: chr7; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 22778553 - 22778317
Alignment:
Q  21 tgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaaca 120  Q
    |||||||| ||||||| ||||||| |||| ||||||||||||| || |||| |||||| |||||||||||||| ||| |||||||||||||||||||| |    
T  22778553 tgacaaatcagaacaaaagaaggatttcttatgcatcatttttattccctcgagatgacgttgaagttgagccctttgatcatatgatagatgctcaaaa 22778454  T
Q  121 tcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaag 220  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||| |||||||    
T  22778453 ccccaagatgtaccagaaagtcaagtatggagattatttgaggcattccttaaagagaaaaatggagcgaaaaacacacaccgatgtggcaaagataaag 22778354  T
Q  221 gaacaagtaatagagaaataaaaaatcaaagaaaatg 257  Q
    ||||| ||||||| || |||| || ||||||||||||    
T  22778353 gaacatgtaatagtgacataacaactcaaagaaaatg 22778317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 22775181 - 22774961
Alignment:
Q  14 agagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatg 113  Q
    |||||| |||||||||| |||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||| ||||| ||| |||||||||||||||    
T  22775181 agagcaatgacaaataaaaacaagagaaggacttctcatgcaacatttgtgtttcctcgagatgatgttgaagtggagccctttgatcatatgatagatg 22775082  T
Q  114 ctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaag 213  Q
    ||||| | || |||||||||||||||||   || |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||     
T  22775081 ctcaaaaccctaagatgtaccagaaagtgttgtatggagattatttgaggcaatccatgaagagaaaaatggagggaaaaacacacactgatgtggcaaa 22774982  T
Q  214 gataaaggaacaagtaataga 234  Q
    |||||||| | ||||||||||    
T  22774981 gataaaggcataagtaataga 22774961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 22765361 - 22765140
Alignment:
Q  14 agagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatg 113  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||||||||| | |||| ||||||||||||| ||||||||||| |||||||||||||||    
T  22765361 agagcagtaacaaataagaacaaaagaaggacttcccatgcatcatttttgatccctcgagatgatgttgaaattgagccatttgatcatatgatagatg 22765262  T
Q  114 ctcaacatcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacacacactgatgttgcaag 213  Q
    || || |  |||| || ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| | |||||| || |     
T  22765261 ctgaaaacaccaaaatttaccagaaagtcaagtttggagattatttaaggcaatccatgaagagaaaaatggagggaaaaacacatattgatgtggccaa 22765162  T
Q  214 gataaaggaacaagtaatagag 235  Q
    ||||||||||||  ||||||||    
T  22765161 gataaaggaacagttaatagag 22765140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 23 - 281
Target Start/End: Original strand, 16085070 - 16085328
Alignment:
Q  23 acaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaacatc 122  Q
    |||||||||||||||| |||||  ||| ||||| ||||| |||| |||| ||| ||||||||||||||||| ||| | ||||||||| ||||| || | |    
T  16085070 acaaataagaacaagaaaaggatgtcttatgcaacatttgtgttccctcgagaagatgttgaagttgagccctttgaccatatgataaatgctgaaaacc 16085169  T
Q  123 ccaagatgtaccagaaagtcaagtttggagattatttgaggcattcc-ttgaagagaaaaatggagggaaaaacacacactgatgttgcaaggataaagg 221  Q
    |||| |||||||||||||||| || |||||||||||||||| | ||| ||||| |||| |  ||||||||||||| |||||||| | ||||||| |||||    
T  16085170 ccaaaatgtaccagaaagtcaggtatggagattatttgagggaatcctttgaaaagaatataggagggaaaaacaaacactgatatggcaaggagaaagg 16085269  T
Q  222 aacaagtaatagagaaataaaaaatcaaagaaaatgcccagtttgagaaaatgaggaaag 281  Q
    || | ||||||||  ||||| ||||  ||||||| | |||||||||||| | ||||||||    
T  16085270 aatatgtaatagaagaataacaaatttaagaaaa-gaccagtttgagaatacgaggaaag 16085328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 23278396 - 23278573
Alignment:
Q  21 tgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatgctcaaca 120  Q
    |||||||||||||||||||||||||||||  || |||||||||||| || |  ||||||| |||| ||| ||| ||| ||||||||||||||| |||| |    
T  23278396 tgacaaataagaacaagagaaggacttcttttgtatcatttttgttcccccgggatgatgctgaacttgggccctttgatcatatgatagatgatcaaaa 23278495  T
Q  121 tcccaagatgtaccagaaagtcaagtttggagattatttgaggcattccttgaagagaaaaatggagggaaaaacaca 198  Q
    ||||||||||||| || || |||  | |||||| |||||||||||  ||||||| || ||| |||| |||||||||||    
T  23278496 tcccaagatgtacaaggaaatcacttatggagagtatttgaggcacaccttgaataggaaattggaaggaaaaacaca 23278573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 22770382 - 22770263
Alignment:
Q  14 agagcagtgacaaataagaacaagagaaggacttctcatgcatcatttttgttgcctcaagatgatgttgaagttgagccatttcatcatatgatagatg 113  Q
    |||||| | |||||||||||||||| ||||||| ||  |  ||||| |||||| ||||| | ||||| |||| | | | ||||  |||||||||||||||    
T  22770382 agagcaatcacaaataagaacaagaaaaggactacttttatatcatatttgttccctcagggtgatgctgaaatcggggcattagatcatatgatagatg 22770283  T
Q  114 ctcaacatcccaagatgtac 133  Q
     |||| ||||||||||||||    
T  22770282 atcaaaatcccaagatgtac 22770263  T

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Target: scaffold0370 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 595
Target Start/End: Original strand, 9028 - 9089
Alignment:
Q  534 catgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctcct 595  Q
    |||||||||||||||  ||||||||| ||||||||| |||||| ||||||||||||||||||    
T  9028 catgataactcccatgttagtgggatcgtggcgccctatgttcggcttcaatctcctctcct 9089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0370; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 595
Target Start/End: Original strand, 14318 - 14379
Alignment:
Q  534 catgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctcct 595  Q
    |||||||||||||||  ||||||||| ||||||||| |||||| ||||||||||||||||||    
T  14318 catgataactcccatgttagtgggatcgtggcgccctatgttcggcttcaatctcctctcct 14379  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 538 - 613
Target Start/End: Original strand, 8821847 - 8821922
Alignment:
Q  538 ataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatccattgaca 613  Q
    |||||||||||  ||||||||| ||||||||| |  ||| |||||| | ||||||||| ||||||||| |||||||    
T  8821847 ataactcccatggtagtgggatcgtggcgccccacattcggcttcagtttcctctcctagacatgatctattgaca 8821922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 617
Target Start/End: Complemental strand, 2883147 - 2883066
Alignment:
Q  536 tgataactcccatcctagtgggattgtggcgcccgatgttctgcttcaatctcctctccttgacatgatccattgacaaggt 617  Q
    ||||||||| |||  |||||||||  ||| | || |||||| |||| ||||||||||| | |||||||||| ||||||||||    
T  2883147 tgataactctcatggtagtgggatcatggtgtcctatgttcggctttaatctcctctcatcgacatgatccgttgacaaggt 2883066  T

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