View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11321_low_12 (Length: 256)

Name: NF11321_low_12
Description: NF11321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11321_low_12
NF11321_low_12
[»] chr3 (5 HSPs)
chr3 (1-246)||(11897148-11897393)
chr3 (1-247)||(26432600-26432846)
chr3 (90-247)||(23424497-23424654)
chr3 (132-247)||(53608336-53608451)
chr3 (93-247)||(38647179-38647333)
[»] chr8 (4 HSPs)
chr8 (1-246)||(23132487-23132732)
chr8 (90-193)||(26587277-26587380)
chr8 (156-247)||(38348466-38348557)
chr8 (72-152)||(14760016-14760096)
[»] chr2 (11 HSPs)
chr2 (1-246)||(14653582-14653827)
chr2 (93-242)||(26791322-26791471)
chr2 (96-247)||(40328174-40328325)
chr2 (96-247)||(35135219-35135370)
chr2 (81-190)||(16322502-16322611)
chr2 (93-190)||(573245-573342)
chr2 (96-247)||(3779048-3779199)
chr2 (93-238)||(177504-177649)
chr2 (93-144)||(35062956-35063007)
chr2 (108-190)||(19265469-19265551)
chr2 (88-174)||(42403209-42403295)
[»] chr1 (4 HSPs)
chr1 (1-246)||(20284849-20285094)
chr1 (81-248)||(50236550-50236717)
chr1 (93-248)||(50451893-50452048)
chr1 (132-190)||(23465403-23465461)
[»] chr4 (6 HSPs)
chr4 (96-247)||(54477407-54477558)
chr4 (90-200)||(14307826-14307936)
chr4 (90-200)||(14291777-14291887)
chr4 (93-190)||(3881771-3881868)
chr4 (90-242)||(46784469-46784621)
chr4 (156-247)||(33803974-33804065)
[»] scaffold0036 (1 HSPs)
scaffold0036 (93-183)||(75967-76057)
[»] chr5 (2 HSPs)
chr5 (93-199)||(32874457-32874563)
chr5 (93-247)||(7817131-7817285)
[»] chr6 (4 HSPs)
chr6 (90-247)||(24893833-24893990)
chr6 (90-174)||(24990660-24990744)
chr6 (84-190)||(13599639-13599745)
chr6 (133-190)||(35233542-35233599)
[»] chr7 (3 HSPs)
chr7 (87-190)||(16769956-16770059)
chr7 (96-229)||(1353794-1353927)
chr7 (93-238)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 11897393 - 11897148
Alignment:
Q  1 caaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagcttttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||    
T  11897393 caaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagctgaaagcttttc 11897294  T
Q  101 catgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  11897293 catgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagag 11897194  T
Q  201 taactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 246  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  11897193 taactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 11897148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 26432600 - 26432846
Alignment:
Q  1 caaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagcttttc 100  Q
    |||| ||||| ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||| ||| || ||||| |||||||| || ||||||||    
T  26432600 caaaaaggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagcggatagcttttc 26432699  T
Q  101 catgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagag 200  Q
    |||||||| |||||| |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||||||||||||||    
T  26432700 catgcaaatgatgaagagataaggggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattccaaagtatagag 26432799  T
Q  201 taactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 247  Q
    ||  | |  ||||  || |||||||||||||| ||||||||||||||    
T  26432800 tagtttgatgaagagacacaatgcatgatgagtttgatggtgatgtc 26432846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 247
Target Start/End: Complemental strand, 23424654 - 23424497
Alignment:
Q  90 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 189  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| || ||||    
T  23424654 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttacctttcc 23424555  T
Q  190 aaagtatagagtaactcggagaagct-acgcaatgcatgatgagcttgatggtgatgtc 247  Q
    | | ||| ||| ||   |||| || | || ||||| |||||||||||||||||||||||    
T  23424554 ataatattgag-aatgtggaggaggtgacacaatgtatgatgagcttgatggtgatgtc 23424497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 53608336 - 53608451
Alignment:
Q  132 ggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatga 231  Q
    |||||||| |||| ||| ||||| |||||| ||||||  ||||  ||||| ||||||||||| |||||| |  | |  || |  || |||||||||||||    
T  53608336 ggatcaccctgtctgagaccatgtgaaggcctgaaagaaggcattttgtttccattccaaagaatagagaaggtagaggaggaaacacaatgcatgatga 53608435  T
Q  232 gcttgatggtgatgtc 247  Q
    ||||||||||||||||    
T  53608436 gcttgatggtgatgtc 53608451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 247
Target Start/End: Original strand, 38647179 - 38647333
Alignment:
Q  93 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 192  Q
    |||||||||||||| |  ||||| || || || || | |||||||||||||| ||| || || |||||||| ||||| ||||  || || || |||||||    
T  38647179 agcttttccatgcataaaatgaagaggtagggagagagcggatcaccttgtctgagaccgtgggaaggcttaaaagggggcattttattaccgttccaaa 38647278  T
Q  193 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 247  Q
    | |||||| |  | |  || |  || |||||||||||||||||||||||||||||    
T  38647279 gaatagagaaggtggatgatgaaacacaatgcatgatgagcttgatggtgatgtc 38647333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 23132487 - 23132732
Alignment:
Q  1 caaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagcttttc 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23132487 caaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttc 23132586  T
Q  101 catgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagag 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  23132587 catgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagag 23132686  T
Q  201 taactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 246  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||    
T  23132687 taactaggagaagctacgcaatgcatgatgaacttgatggtgatgt 23132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 26587380 - 26587277
Alignment:
Q  90 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 189  Q
    ||||| || ||||| ||||| ||||| || || || ||||| || |||||||||||||||||||| | ||||||||| || ||||| ||||| ||||| |    
T  26587380 gaaagtttctccatacaaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttc 26587281  T
Q  190 aaag 193  Q
    ||||    
T  26587280 aaag 26587277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 38348557 - 38348466
Alignment:
Q  156 gaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 247  Q
    |||||||||||||| | |||  |||| ||||||||||| |||||| |  | || || |  || |||||||||||||||||||||||||||||    
T  38348557 gaaggcttgaaaggagacaatctgttgccattccaaaggatagagaaggtgggtgaggtaacacaatgcatgatgagcttgatggtgatgtc 38348466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 14760096 - 14760016
Alignment:
Q  72 gctgagtttatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggcca 152  Q
    ||||| |||||||||   || ||||||||||| ||||| ||||| || || |||||||||||||| ||||| || ||||||    
T  14760096 gctgaatttatagcaatagagagcttttccatacaaagaatgaagaggtatggggacaacggatctccttggcgaaggcca 14760016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 14653582 - 14653827
Alignment:
Q  1 caaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagcttttc 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||    
T  14653582 caaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagcggatagcttttc 14653681  T
Q  101 catgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagag 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14653682 catgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagag 14653781  T
Q  201 taactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  14653782 taactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 14653827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 242
Target Start/End: Complemental strand, 26791471 - 26791322
Alignment:
Q  93 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 192  Q
    ||||| ||||||||||| || ||||| || ||||| | ||||||||| || | ||||||||| | ||||| |||||| |||||| | || ||||||||||    
T  26791471 agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa 26791372  T
Q  193 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtg 242  Q
    | |||||| | || |  ||||  |||||||||||||||||||||||||||    
T  26791371 gaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatggtg 26791322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 247
Target Start/End: Complemental strand, 40328325 - 40328174
Alignment:
Q  96 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 195  Q
    |||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||| | |||||||||||| |  | |||||| |||||||| |  |    
T  40328325 ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagaaagcttgtttccattccataaaa 40328226  T
Q  196 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 247  Q
    | ||||| ||||| || |  || |||||||||||||| |||||||| |||||    
T  40328225 ttgagtagctcggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 40328174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 247
Target Start/End: Original strand, 35135219 - 35135370
Alignment:
Q  96 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 195  Q
    |||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||| | |||||||||||| |  | |||||| |||||||| |  |    
T  35135219 ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataaaa 35135318  T
Q  196 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 247  Q
    | ||||| || || || |  || |||||||||||||| |||||||| |||||    
T  35135319 ttgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 35135370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 16322611 - 16322502
Alignment:
Q  81 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgt 180  Q
    |||||| | ||||| |||||||||||||| |||||||| || || || | ||| ||||||||||| |||||||| |  ||||||||||| |||| |||||    
T  16322611 atagcaacagaaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgt 16322512  T
Q  181 tcccattcca 190  Q
    | ||||||||    
T  16322511 ttccattcca 16322502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 573342 - 573245
Alignment:
Q  93 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 190  Q
    ||||| ||||||||||||||||| || ||||| || | |||||||||||||| ||||||||| ||||| || |||||  |||  ||||| ||||||||    
T  573342 agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaaggatgcattttgttaccattcca 573245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 247
Target Start/End: Original strand, 3779048 - 3779199
Alignment:
Q  96 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 195  Q
    |||||||| || ||||||||||||||||| |||| ||| |||||||| || || ||||| | |||||||||||| |  | |||||| |||||||| |  |    
T  3779048 ttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataaca 3779147  T
Q  196 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 247  Q
      ||||| || || || |  || |||||||||||||| |||||||| |||||    
T  3779148 atgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 3779199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 238
Target Start/End: Complemental strand, 177649 - 177504
Alignment:
Q  93 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 192  Q
    |||||||||||||| | |||||| || ||||| ||||| || ||||||||||  || ||||| | |||||||| ||| ||| | ||||| ||||||||||    
T  177649 agcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaa 177550  T
Q  193 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgat 238  Q
    | | |||| |  | | |||||  || |||||||||||||| |||||    
T  177549 gaacagagaatgttgaagaagtgacacaatgcatgatgagtttgat 177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 35062956 - 35063007
Alignment:
Q  93 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtc 144  Q
    ||||||||||| ||||||||||||||||| ||||| |  |||||||||||||    
T  35062956 agcttttccatacaaaggatgaaaagatagggggatagtggatcaccttgtc 35063007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 19265551 - 19265469
Alignment:
Q  108 aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 190  Q
    ||||||||||||||||| |||| ||| |||||||| || || ||||| | |||||||||||| |  | |||||| ||||||||    
T  19265551 aggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattcca 19265469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 42403209 - 42403295
Alignment:
Q  88 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 174  Q
    ||||||||||||||||||| || || || |||||||| || |  || |||||||| ||||||||||| |  ||||||||||| ||||    
T  42403209 ctgaaagcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggca 42403295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 20285094 - 20284849
Alignment:
Q  1 caaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagcttttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20285094 caaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttc 20284995  T
Q  101 catgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||   ||||| |||||||||||||||    
T  20284994 catgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttccaaagtatagag 20284895  T
Q  201 taactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 246  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  20284894 taactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 20284849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 248
Target Start/End: Original strand, 50236550 - 50236717
Alignment:
Q  81 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgt 180  Q
    |||||| |||| || || ||||| || | ||||||||| |||||||| | ||||||||||| || ||||||||| | |||||||||||| |||| |||||    
T  50236550 atagcaactgatagtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgt 50236649  T
Q  181 tcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtcc 248  Q
    |||| ||||| |  ||||||||  | || || |  || |||||||||||||| ||| |||||||||||    
T  50236650 tcccgttccataagatagagtaggtgggtgaggagacacaatgcatgatgagtttggtggtgatgtcc 50236717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 248
Target Start/End: Complemental strand, 50452048 - 50451893
Alignment:
Q  93 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 192  Q
    ||||| ||||| ||||| ||||| || ||||| || | |||||||||||||||||||||||| | ||| |||||| ||||||  ||||| |||||||| |    
T  50452048 agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattccata 50451949  T
Q  193 gtatagagtaactcggagaagct-acgcaatgcatgatgagcttgatggtgatgtcc 248  Q
      |||||| || | |||| || | || ||||||||||| || |||||||||||||||    
T  50451948 agatagagaaagt-ggaggaggtgacacaatgcatgataagtttgatggtgatgtcc 50451893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 23465461 - 23465403
Alignment:
Q  132 ggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 190  Q
    |||||||||||||| || ||||| | |||||||||| ||||||| ||||| ||||||||    
T  23465461 ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttaccattcca 23465403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 247
Target Start/End: Original strand, 54477407 - 54477558
Alignment:
Q  96 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 195  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||| | |||||||||||  || | |||||| ||||||||||| |    
T  54477407 ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattccaaagga 54477506  T
Q  196 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 247  Q
    || ||||  | |  || |  || |||||||||||||||||||||||||||||    
T  54477507 taaagtattttgatgatgaaacacaatgcatgatgagcttgatggtgatgtc 54477558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 14307936 - 14307826
Alignment:
Q  90 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 189  Q
    ||||| |||||||| |||| ||||||||| ||||| ||    ||||| ||||||| ||||||||| |||||||| |||||  ||| ||||||||||||||    
T  14307936 gaaagtttttccatacaaatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcc 14307837  T
Q  190 aaagtatagag 200  Q
    |||| ||||||    
T  14307836 aaagaatagag 14307826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 14291887 - 14291777
Alignment:
Q  90 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 189  Q
    ||||| |||||||| || | ||||||||| ||||| ||    ||||| ||||||| ||||||||| |||||||| |||||  ||| ||||||||||||||    
T  14291887 gaaagtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcc 14291788  T
Q  190 aaagtatagag 200  Q
    |||| ||||||    
T  14291787 aaagaatagag 14291777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 3881868 - 3881771
Alignment:
Q  93 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 190  Q
    ||||||||||| ||||| ||||| || ||| | || | |||||||||||||||||||||||| | ||| |||||| ||||||  ||||| ||||||||    
T  3881868 agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattcca 3881771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 242
Target Start/End: Original strand, 46784469 - 46784621
Alignment:
Q  90 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 189  Q
    ||||| |||| ||||||||||||||| || || || || |  |||||||||||||  |||||||| | ||| |||||||||||||| || || |||||||    
T  46784469 gaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatttccattcc 46784568  T
Q  190 aaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtg 242  Q
    |||| |  ||| || | |  || |  || ||||||||||||||||||||||||    
T  46784569 aaaggacggagaaagttgatgacgtaacacaatgcatgatgagcttgatggtg 46784621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 33804065 - 33803974
Alignment:
Q  156 gaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 247  Q
    |||||||||||||| ||||  ||||| |||||||| |||||||||||  | |  || |  || |||||||||||||||||||||||||||||    
T  33804065 gaaggcttgaaaggaggcattttgtttccattccacagtatagagtatgtagatgaggaaacacaatgcatgatgagcttgatggtgatgtc 33803974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 76057 - 75967
Alignment:
Q  93 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcc 183  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||| | ||||||||| |  |||| ||||||||    
T  76057 agcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagcttgttcc 75967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 32874457 - 32874563
Alignment:
Q  93 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 192  Q
    |||||||||||||||| |||||| | ||| || || | ||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  32874457 agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaa 32874556  T
Q  193 gtataga 199  Q
    | |||||    
T  32874557 ggataga 32874563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 247
Target Start/End: Complemental strand, 7817285 - 7817131
Alignment:
Q  93 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 192  Q
    ||||||||||||||||| |||||||| ||||| || || || ||||| |||| ||| ||||| | |||||||||||  || |  |||||||||||||| |    
T  7817285 agcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattccata 7817186  T
Q  193 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 247  Q
      ||||||||  | |  || | ||| |||||||||||||||||||| ||||||||    
T  7817185 aaatagagtagttggaggatgatacacaatgcatgatgagcttgattgtgatgtc 7817131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 247
Target Start/End: Original strand, 24893833 - 24893990
Alignment:
Q  90 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 189  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| |||||||    
T  24893833 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattcc 24893932  T
Q  190 aaagtatagagtaactcggagaagct-acgcaatgcatgatgagcttgatggtgatgtc 247  Q
    | | ||| ||| ||   |||| || | || |||||||||||||||||||||||||||||    
T  24893933 ataatatggag-aatgtggaggaggtgacacaatgcatgatgagcttgatggtgatgtc 24893990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 24990660 - 24990744
Alignment:
Q  90 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 174  Q
    |||||||| ||||||||||| |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||    
T  24990660 gaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggca 24990744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 190
Target Start/End: Complemental strand, 13599745 - 13599639
Alignment:
Q  84 gcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcc 183  Q
    ||||||||||| |||||||| || | |||||| |||||||| || |  ||||||||||| |||||  |||| | |||||||||  |||| |||||||| |    
T  13599745 gcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaacttgttac 13599646  T
Q  184 cattcca 190  Q
    |||||||    
T  13599645 cattcca 13599639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 35233599 - 35233542
Alignment:
Q  133 gatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 190  Q
    |||||||||||||||| ||||| | ||||||||||   ||||||||||| ||||||||    
T  35233599 gatcaccttgtcggagaccatgtgtaggcttgaaattaggcaacttgtttccattcca 35233542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 16769956 - 16770059
Alignment:
Q  87 gctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccat 186  Q
    ||||| || |||||||| || | |||||| |||||||| || |  |||||||||||||| || ||||| | ||| |||||| ||||||| ||||| ||||    
T  16769956 gctgagagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaatttgttaccat 16770055  T
Q  187 tcca 190  Q
    ||||    
T  16770056 tcca 16770059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 1353794 - 1353927
Alignment:
Q  96 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 195  Q
    |||||||| ||||| ||||||||||| || || |  ||||||||||||  ||||||||| | ||||||||| || | || ||| ||||||||| | || |    
T  1353794 ttttccatacaaagaatgaaaagatatggtgagagtggatcaccttgtatgaggccatgagtaggcttgaagggagacatctttttcccattcgagagga 1353893  T
Q  196 tagagtaactcggagaagctacgcaatgcatgat 229  Q
    ||||| || | |  || || ||||||||||||||    
T  1353894 tagagaaagtggaggaggcaacgcaatgcatgat 1353927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 238
Target Start/End: Original strand, 1579159 - 1579304
Alignment:
Q  93 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 192  Q
    ||||||||||||||||| || || || |||||||| | ||||||||| |||| ||| ||||| | ||| |  || || ||||||||||| | |||| | |    
T  1579159 agcttttccatgcaaagaataaagaggtaaggggagagcggatcaccctgtctgagcccatgagtaggatgaaagggaggcaacttgtttctattctaga 1579258  T
Q  193 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgat 238  Q
    | |||||| || | | |||||  || |||||||||||||| |||||    
T  1579259 gaatagagaaagttgaagaagaaacacaatgcatgatgagattgat 1579304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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