View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11321_low_15 (Length: 239)
Name: NF11321_low_15
Description: NF11321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11321_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 25617126 - 25616904
Alignment:
| Q |
1 |
catcattccaaagtacatatagagctaatacactttattttacaggttaatattaaaaggagaattcttttagctgtgcatctgaatcttatagacaaaa |
100 |
Q |
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| T |
25617126 |
catcattccaaagtacatatagagctaatacactttattttacaggttaatattaaaaggagaattcttttagctgtgcatctgaatcttatagacaaaa |
25617027 |
T |
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| Q |
101 |
tttagactcacctccaacatgggagctaaatagagtctactaagattagtgaatcatactctctaaaatcacattctcccatcccttaacaatagccata |
200 |
Q |
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| T |
25617026 |
tttagactcacctccaacatgggagctaaatagagtctactaagattagtgaatcatactctcaaaaatcacattctcccatcccttaacaatagccata |
25616927 |
T |
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| Q |
201 |
tgcagtccttctaatagtgaagt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
25616926 |
tgcagtccttctaatagtgaagt |
25616904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 25611670 - 25611738
Alignment:
| Q |
1 |
catcattccaaagtacatatagagctaatacactttattttacaggt-taatattaaaaggagaattct |
68 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
25611670 |
catcattccaaagtacatatagagctaatacactttattctacaggtaaaatattaaaaggagaattct |
25611738 |
T |
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