View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11321_low_17 (Length: 212)
Name: NF11321_low_17
Description: NF11321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11321_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 24637063 - 24636889
Alignment:
| Q |
19 |
taaattatatggattccccgaaaaagaagtgatctgtgattctctttatgcaggcattatacagtgcctctcaacactggctattcccccaagatttatg |
118 |
Q |
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| T |
24637063 |
taaattatatggattccccgaaaaagaagtgatctgtgattctctttatgcaggcattatacagtgcctctcaacactggctattcccccaagatttatg |
24636964 |
T |
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| Q |
119 |
aggttgacattgactcaggttgtgaccacacttgggttcagtgtgatgcaccatgtataggttttatcaaggtga |
193 |
Q |
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| T |
24636963 |
aggttgacattgactcagtttgtgaccacacttgggttcagtgtgatgcaccatgtaaaggttttatcaaggtga |
24636889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 24715606 - 24715449
Alignment:
| Q |
19 |
taaattatatggattccccgaaaaagaa----gtgatctgtgattctctttatgcaggcattatacagtgc---ctctcaacactggctattcccccaag |
111 |
Q |
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| T |
24715606 |
taaattatatggattccctgaagaaaaataaagtgatacgtggttctctttatgcaggcattgtacagtgtgatctatcaacattggctatgcctctaag |
24715507 |
T |
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| Q |
112 |
atttatgaggttgacattgactcaggttgtgaccacacttgggttcagtgtgatgcac |
169 |
Q |
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| T |
24715506 |
ctttatgacgttgacattgactcaggttgtgacagcacttgggttcagtgtgatgcac |
24715449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 10330825 - 10330707
Alignment:
| Q |
63 |
tttatgcaggcattatacagtgcctctcaacactggctattcccccaagatttatgaggttgacattgactcaggttgtgaccacacttgggttcagtgt |
162 |
Q |
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| T |
10330825 |
tttatgtaggtattatactgtctctctcaacattggctatcctccaaagctttatgaccttgatatcgactcaggtagtgacctcacttgggttcagtgt |
10330726 |
T |
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| Q |
163 |
gatgcaccatgtataggtt |
181 |
Q |
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| T |
10330725 |
gatgcaccatgtaaaggtt |
10330707 |
T |
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