View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11321_low_3 (Length: 551)
Name: NF11321_low_3
Description: NF11321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11321_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 17 - 540
Target Start/End: Complemental strand, 25537867 - 25537332
Alignment:
| Q |
17 |
aggtttgttggatgaaagccgagagttgccgaacctagctatgattcgtgatattttcgctgaagtttttaagagtgtttggaaggtttttcctaagatt |
116 |
Q |
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| T |
25537867 |
aggtttgttggatgaaagccgagagttgccgaacctagctatgattcgtgatattttcgctgaagtttttaagagtgtttggaaggtttttcctaagatt |
25537768 |
T |
|
| Q |
117 |
attttcatat---gtaaggtcttagaaataagagggtttttcctaaaatttcagggctagttacatagtcaaatgttgtaatgtgtcagtctttatatga |
213 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25537767 |
cttttcatattgtgtaaggtcttagaaataagagggtttttcctaaaatttcagggctagttacatagtcaaatgttgtaatgtgtcggtctttatatga |
25537668 |
T |
|
| Q |
214 |
acaagtattcaagggatgttctgtccctttccttcatatgaatgaatgtgttgccaaagagctaaatgaaattaagttaaagccccttgaagctgctagt |
313 |
Q |
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| T |
25537667 |
acaagtattcaagggatgttctgtccctttccttcatatgaatgagtgtgttgccaaagagataaatgaaattaagttaaagccccttgaagttgctagt |
25537568 |
T |
|
| Q |
314 |
ccttttgctttgaggattcgagagatagatgaaagtgattagatgagactttgagtaagggtgaatttcaaaccttttcagcttgttaaaaccgagatga |
413 |
Q |
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| T |
25537567 |
ccttttgctttgaggattcgagagatagataaaagtgattagatgagactttgagtaagggtgaatttcaaaccttttcagcttgttaaaaccgagatga |
25537468 |
T |
|
| Q |
414 |
agaggtaacattcctcaatgaaacaggttg------------ctgaattctcagattttagtctttgctcttctttatcctatttgctcctacaattttc |
501 |
Q |
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| T |
25537467 |
agaggtaacattcctcaatgaaacaggttgctgatgcatttgctgaattctcggattttagtctttgc---tctttatcctatttgctcctacaattttc |
25537371 |
T |
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| Q |
502 |
agattatatgataatggttcattgaggtttttctgatgt |
540 |
Q |
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| T |
25537370 |
agattatatgataatggttcattgaggtttttctgatgt |
25537332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 132 - 294
Target Start/End: Complemental strand, 25525228 - 25525063
Alignment:
| Q |
132 |
gtcttagaaataagagggtttttcctaaaatttcaggg-ctagttacatagtcaaatgttgtaatgtgtcag--tctttatatgaacaagtattcaaggg |
228 |
Q |
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|||||||||||||||||||||||| ||| | ||| ||| |||||||| | |||| | | |||||||||| |||| ||||||||| |||||||||| |
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| T |
25525228 |
gtcttagaaataagagggtttttcttaagaattctggggctagttacttggtcacacatcataatgtgtcacattcttgatatgaacacatattcaaggg |
25525129 |
T |
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| Q |
229 |
atgttctgtccctttccttcatatgaatgaatgtgttgccaaagagctaaatgaaattaagttaaa |
294 |
Q |
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|||| |||||||||| |||||||||| ||| |||||||||||||||||||| |||| ||||||||| |
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| T |
25525128 |
atgtcctgtcccttttcttcatatgactgagtgtgttgccaaagagctaaaggaaactaagttaaa |
25525063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 189 - 335
Target Start/End: Original strand, 25516924 - 25517072
Alignment:
| Q |
189 |
ttgtaatgtgtcag--tctttatatgaacaagtattcaagggatgttctgtccctttccttcatatgaatgaatgtgttgccaaagagctaaatgaaatt |
286 |
Q |
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||||||||||||| |||| |||||||||||||| |||||||||||||||||||| |||| |||| ||| |||||||||||||||||||| |||| | |
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| T |
25516924 |
ttgtaatgtgtcacattcttgatatgaacaagtatcaaagggatgttctgtcccttttcttcttatggctgagtgtgttgccaaagagctaaaggaaact |
25517023 |
T |
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| Q |
287 |
aagttaaagccccttgaagctgctagtccttttgctttgaggattcgag |
335 |
Q |
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||||||| | ||| |||| || |||||||| |||||||||||||||| |
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| T |
25517024 |
aagttaaggacccatgaaactagaagtcctttggctttgaggattcgag |
25517072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 318
Target Start/End: Complemental strand, 44461174 - 44461065
Alignment:
| Q |
209 |
tatgaacaagtattcaagggatgttctgtccctttccttcatatgaatgaatgtgttgccaaagagctaaatgaaattaagttaaagccccttgaagctg |
308 |
Q |
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||||||||||||| || || |||||||| ||||| ||||||||| ||| |||||||| || ||||| || ||| |||||||||||| |||||||||| |
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| T |
44461174 |
tatgaacaagtatccataggttgttctgttccttttcttcatatggctgagtgtgttgcaaaggagcttaaggaagctaagttaaagccacttgaagctg |
44461075 |
T |
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| Q |
309 |
ctagtccttt |
318 |
Q |
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| T |
44461074 |
gtagtccttt |
44461065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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