View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11321_low_7 (Length: 355)
Name: NF11321_low_7
Description: NF11321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11321_low_7 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 355
Target Start/End: Original strand, 1786557 - 1786907
Alignment:
| Q |
7 |
ctttcatggataaagaggctagaaattgcaattgatagtgctagaggtgtttggtttttgcacacatatgaaggaggctgcattgttcatcgtgacatca |
106 |
Q |
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| T |
1786557 |
ctttcatggataaagaggctagaaattgcaattgatagtgctagaggtgtttggtttttgcacacatatgaaggaggctgcattgttcatcgtgacatca |
1786656 |
T |
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| Q |
107 |
aggtcaatctttattaacatcttaaacacattgagtataatgcttagaattgccataaagttgacagaattatatgatgacaccgtgattttgttaaaaa |
206 |
Q |
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| T |
1786657 |
aggtcaatctttattaacatcttaaacaaattgagtacaatgcttagaattgccataaagttgacagaattatatgatgacaccttgattttgttaaaat |
1786756 |
T |
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| Q |
207 |
tgtgataccgtaattttgtcaaattcactagtaatcgaaacatatat--taatttgcggttttggtacaacatgacatgtagatcaataattatggtaaa |
304 |
Q |
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| T |
1786757 |
tgtgatatcgaaattttgtcaaattcactagtaatcgaaacatatatactaatttttggttttggtacgacatgacacgtagattaataattgtggtaaa |
1786856 |
T |
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| Q |
305 |
agaagtcttgtgttagnnnnnnnggttgcaaaaagggtgggagaggtgcaa |
355 |
Q |
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| T |
1786857 |
aggagtcttgtgttagtttttttggttacacaaagggtgggagaggtgcaa |
1786907 |
T |
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