View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11321_low_8 (Length: 317)
Name: NF11321_low_8
Description: NF11321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11321_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 13015903 - 13015631
Alignment:
| Q |
18 |
aaaacatgcaaaaccaaacgaaggtgtgtagaaacgtaaaaacaactgcaacatgcaatatcaccatttaaaactacataaacggaaggaggtgaaaaca |
117 |
Q |
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| T |
13015903 |
aaaacatgcaaaaccaaacgaaggtgcgtagaaacgtaaaaacaactgcaacatgcaatatcaccatttaaaacttcataaacggaaggaggtgaaaaca |
13015804 |
T |
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| Q |
118 |
aaagtagaaaactaaatttagtcacaaagatataaggcttgaaacataaagagatactaacagctgcgacactggagcttgaagtggtgacactagatca |
217 |
Q |
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| T |
13015803 |
aa-gtagaaaactaaatttagtcacaaagatataaggcttgaaacataaagagatactaacagctgcgacactggagcttgaagtggtgacactagatca |
13015705 |
T |
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| Q |
218 |
acgatagatgataaatttagggttttgttttgagtagtgttgtttgagaaaaagattgaatcggaaaatagaag |
291 |
Q |
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| T |
13015704 |
acgagagatgataaatttagggttttgttttgagtagtgttgtttgagaaaaagattgaatcggaaaatagaag |
13015631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 13087275 - 13087003
Alignment:
| Q |
18 |
aaaacatgcaaaaccaaacgaaggtgtgtagaaacgtaaaaacaactgcaacatgcaatatcaccatttaaaactacataaacggaaggaggtgaaaaca |
117 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13087275 |
aaaacatgtaaaaccaaacgaaggtgcgtagaaacgtaaaaacaactgcaacatgcaatatcaccatttaaaacttcataaacggaaggaggtgaaaaca |
13087176 |
T |
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| Q |
118 |
aaagtagaaaactaaatttagtcacaaagatataaggcttgaaacataaagagatactaacagctgcgacactggagcttgaagtggtgacactagatca |
217 |
Q |
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| T |
13087175 |
aa-gtagaaaactaaatttagtcacaaagatataaggcttgaaacataaagagatactaacagctgcgacactggagcttgaagtggtgacactagatca |
13087077 |
T |
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| Q |
218 |
acgatagatgataaatttagggttttgttttgagtagtgttgtttgagaaaaagattgaatcggaaaatagaag |
291 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13087076 |
acgagagatgataaatttagggttttgttttgagtagtgttgtttgagaaaaagattgaatcggaaaatagaag |
13087003 |
T |
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