View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11322_high_4 (Length: 332)
Name: NF11322_high_4
Description: NF11322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11322_high_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 83 - 332
Target Start/End: Complemental strand, 3480210 - 3479961
Alignment:
| Q |
83 |
gcagaacctgtgtttagcaaggcaggagaaacaattggagtaaaccatatgggaatggaaataaccgatcaggtaaaaattgttattttgcttttcgaag |
182 |
Q |
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| T |
3480210 |
gcagaacctgtgtttagcaaggcaggagaaacaattggagtaaaccatatgggaatggaaataaccgatcaggtaaaaattgttattttgctttttgaag |
3480111 |
T |
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| Q |
183 |
ttacttgcattgtcttaaaattttggttgggcttaactcatccaatgtaaggtgtgagctgctccgacttattataaacaaatttacaagcaatatctca |
282 |
Q |
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| T |
3480110 |
ttacttgcattgtcttaaaattttggttgggcttaactcatccaatgtaaggtgtgagctgccccgacttattataaacaaatttacaagcaatatctca |
3480011 |
T |
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| Q |
283 |
tccaatgtgatctatgaagtgtgactcgagtgacccgatatcaggccact |
332 |
Q |
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| T |
3480010 |
tccaatgtgatctatgaagtgtgactcgagtgacccgatatcaggccact |
3479961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 3455606 - 3455519
Alignment:
| Q |
85 |
agaacctgtgtttagcaaggcaggagaaacaattggagtaaaccatatgggaatggaaataaccgatcaggtaaaaattgttattttg |
172 |
Q |
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| T |
3455606 |
agaacctgtgtttagcaaggcaggtgaaacaattggagtaaactatatgggaatggaaataacagatcaggtaaatattgttattttg |
3455519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 3855632 - 3855697
Alignment:
| Q |
5 |
gataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttg |
70 |
Q |
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| T |
3855632 |
gataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttg |
3855697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 48694740 - 48694814
Alignment:
| Q |
85 |
agaacctgtgtttagcaaggcaggagaaacaattggagtaaaccatatgggaatggaaataaccgatcaggtaaa |
159 |
Q |
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| T |
48694740 |
agaacctgtattcagcaaggcaggtgaaacaattggaatcaattacatgggaatggatgtaaccgatcaggtaaa |
48694814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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