View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11322_low_2 (Length: 264)
Name: NF11322_low_2
Description: NF11322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11322_low_2 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 51114683 - 51114424
Alignment:
| Q |
15 |
agagacttgagaagaacacactccgatgtcacattttaatgtaggtttcattttgttttgtaccttatttgccgtgtgaaatgaactaca---------- |
104 |
Q |
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| T |
51114683 |
agagacttgagaagaacacactccgatgtcacattttaatgtaggtttcattttgttttgtatcttatttgccgtgtgaaatgaactacagacatacaca |
51114584 |
T |
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| Q |
105 |
tttcaagcatgcattctatctaacttctaatccaacacataaataaggttcaaacaccaatggacatgaataattagcagaatattttctcagatatctn |
204 |
Q |
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| T |
51114583 |
tttcaagcatgcattctatctaacttctaatccaacaaataaataaggttcaaacaccaatggacatgaataatttgcagaatattttctcagatatcta |
51114484 |
T |
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| Q |
205 |
nnnnnngaaagagataatcaagaattaaatttgtactagaataatattaacaccaaacca |
264 |
Q |
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| T |
51114483 |
aaaaaagaaagagataatcaagaattaaatttgtactagaataatattaacaccaaacca |
51114424 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 552568 - 552618
Alignment:
| Q |
211 |
gaaagagataatcaagaattaaatttgtactagaataatattaacaccaaacca |
264 |
Q |
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| T |
552568 |
gaaagagacaatcaagaattaaatttg---cagaataatattaacaccaaacca |
552618 |
T |
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