View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11323_low_2 (Length: 481)
Name: NF11323_low_2
Description: NF11323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11323_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 67 - 463
Target Start/End: Original strand, 14011046 - 14011442
Alignment:
| Q |
67 |
tagaaatgaggtttctattttaccttcaatttatggctttgattctagccatgctttgtttatgaataaacaaaaagaaagaaccccacaaagaggccaa |
166 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| |
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| T |
14011046 |
tagaaatcaggtttctattttaccttcaatttatggctttgattctagccatgctttgtttatgaataaacaaaaagaaagaactcaacaaataggccaa |
14011145 |
T |
|
| Q |
167 |
gagataattcaacgctaagcataaaatccaacggagcaattcacctaacataaggaaaactaatacaatgtgcatacctgattcatggctaacacttgcc |
266 |
Q |
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| T |
14011146 |
gagataattcaacgctaagcataaaattcaacggagcaattcacctaacataaggaaaactaatacaatgtgcatacctgattcatggctaacacttgcc |
14011245 |
T |
|
| Q |
267 |
cattgcttttctttcacatatttcaattttctcaagaaatacctgcaacagttaattgcaaaagaagcttgttatatatacattttcatatttaatacac |
366 |
Q |
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| T |
14011246 |
cattgcttttctttcacatttttcaattttctcaagaaatatctgcaacagttaattgcaaaagaagcttgttatatatacattttcatatttaatacac |
14011345 |
T |
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| Q |
367 |
taattcaaagcagaaggtgctaagtcgttttcataaaataataaactaaacttacaatttccatgcaaatggcaatttaatctacgcccaagtgtat |
463 |
Q |
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| T |
14011346 |
taattcaaagcagaaggtgctaaatcgttttcataaaataataaactaaacttacaatttccatgcaaatggcaatttaatctacgcccaagtgtat |
14011442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 14010952 - 14011019
Alignment:
| Q |
1 |
aacacaagcaaaccatcaaaagaaggttcctaaagtatctttagttttcggtttgttcgttaacaata |
68 |
Q |
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| T |
14010952 |
aacacaagcaaaccatcaaaagaaggttcctaaagtatctttagttttcggtttgttcgttaacaata |
14011019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 6e-66; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 67 - 236
Target Start/End: Complemental strand, 3882921 - 3882763
Alignment:
| Q |
67 |
tagaaatgaggtttctattttaccttcaatttatggctttgattctagccatgctttgtttatgaataaacaaaaagaaagaaccccacaaagaggccaa |
166 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3882921 |
tagaaatgaggtttctattttaccttcaatttatggctttgattctagccatgctttgtttatgaataaacaaaaagaaagaaccccacaaagaggcca- |
3882823 |
T |
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| Q |
167 |
gagataattcaacgctaagcataaaatccaacggagcaattcacctaacataaggaaaactaatacaatg |
236 |
Q |
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| T |
3882822 |
----------aacgctaagcataaaatccaacggagcaattcacctaacaaaaggaaaactaatacaatg |
3882763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 231 - 362
Target Start/End: Complemental strand, 3882689 - 3882558
Alignment:
| Q |
231 |
acaatgtgcatacctgattcatggctaacacttgcccattgcttttctttcacatatttcaattttctcaagaaatacctgcaacagttaattgcaaaag |
330 |
Q |
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| T |
3882689 |
acaatgtgcatacctgattcatggctaacacttgcccattgcttttctttcacatatttcaattttctcaagaaatacctgcaacagttaattgcaaaag |
3882590 |
T |
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| Q |
331 |
aagcttgttatatatacattttcatatttaat |
362 |
Q |
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| T |
3882589 |
aagcttggtatatatgctttttcatatttaat |
3882558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 3883015 - 3882948
Alignment:
| Q |
1 |
aacacaagcaaaccatcaaaagaaggttcctaaagtatctttagttttcggtttgttcgttaacaata |
68 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3883015 |
aacacaagcaaaccatcaaaagaaggttcctaaagtatctttagttttcggtttgtttgttaacaata |
3882948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 463
Target Start/End: Complemental strand, 3882515 - 3882485
Alignment:
| Q |
433 |
aaatggcaatttaatctacgcccaagtgtat |
463 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3882515 |
aaatggcaatttaatctacgcccaagtgtat |
3882485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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