View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11323_low_4 (Length: 315)
Name: NF11323_low_4
Description: NF11323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11323_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 40179803 - 40180106
Alignment:
| Q |
1 |
tcaaaaatgatcattgtcttgttacaagtatgtctttttatttcactctaaatacaaatcattaaaatccaaaaaagaagagctgaagacattagtttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40179803 |
tcaaaaatgatcattgtcttgttacaagtatgtctttttatttcactctaaatacaaatcattaaaatccaaaaaagaagagctgaagacattagtttga |
40179902 |
T |
|
| Q |
101 |
gtagttttatgtgcattcatatcaaatcaatatggttgtgattccttaaggacatatagattatcgtttacttttttcttattgatcaattattttcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40179903 |
gtagttttatgtgcattcatatcaaatcaatatggttgtgattccttaaggacatatagattatcgtttacttttttcttattgatcaattattttcttg |
40180002 |
T |
|
| Q |
201 |
ttgctttgcactgataagcagagagaccgccacacccatttttccaagggaactacgatccaggtaaatgaaatcaactcagttttgcaacttttctaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40180003 |
ttgctttgcactgataagcagagagaccgccacacccatttttccaagggaactatgatccaggtaaatgaaatcaactcagttttgcaacttttctaat |
40180102 |
T |
|
| Q |
301 |
tctt |
304 |
Q |
| |
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|||| |
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|
| T |
40180103 |
tctt |
40180106 |
T |
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