View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11324A_high_1 (Length: 900)
Name: NF11324A_high_1
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 782; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 782; E-Value: 0
Query Start/End: Original strand, 47 - 892
Target Start/End: Original strand, 34944626 - 34945482
Alignment:
| Q |
47 |
atgagatgcgtcaaatccttactgcattgcctgttggaattggtgttttctgtagcatgctgtttgttgcatttcctactcatagacatggaattggctt |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34944626 |
atgagatgcgtcaaatccttactgcattgcctgttggaattggtgttttctgtagcatgctgtttgttgcatttcctactcatagacatggaattggctt |
34944725 |
T |
|
| Q |
147 |
cccactttcaaca--------tttatatataagccctttttatatttatataattatgtagcaaattattggtgtgtttggttgtacgttgaagcgtgaa |
238 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34944726 |
cccactttcaacaaattaacatttatatataaggcctttttatatttatataattatgtagcaaattattggtatgtttggttgtacgttgaagcgtgaa |
34944825 |
T |
|
| Q |
239 |
ttctcacgtttcgatgccattctactgtgaaaatatagaagccacaaactggggcatcagactgaacgtcgt---gagtgaactctcatcgctaaagcaa |
335 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
34944826 |
ttctcacgtttcgatgccattctaccgtgaaaatatagaagccacaaattggggcatcagactgaacgtcgtattgagtgaactctcaccgctaaagcaa |
34944925 |
T |
|
| Q |
336 |
atgtatactatattatatctgaaatatataatcatgaattcaacggaattccaataatcagaatcatgctgatacctcatgaaattgaattcgactttat |
435 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34944926 |
atgtatactatattatatttgaaatatataatcatgaattcaacggaattccaataattagaatcatgctgatacctcatgaaattgaattcgactttat |
34945025 |
T |
|
| Q |
436 |
tgaataaaaatatgttttagcaaatatcaatttgttacatcaaagtaacttgtgcaaggcactactaaactatttgcattttattttgagaaattgatgt |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34945026 |
tgaataaaaatatgttttagcaaatatcaatttgttacatcaaagtaacttgtgcaaggcactactaaactatttgcattttattttgagaaattgatgt |
34945125 |
T |
|
| Q |
536 |
cacacaaattacattcttattcttgttattacactggttaggggccacctatatgtcacttgagttaaatataagtggctcctttattacagtcccctta |
635 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34945126 |
cacacaaattacattcttattcttgttattacactggttaggggccacctatatgtcacttgagttaaatataagtggctcctttattacagtcccctta |
34945225 |
T |
|
| Q |
636 |
taaatatatttgaagcaaaaatacaattatttattaaattacagcaaggtttaaggatagagctcaataagagacctaaaaccaaatgtgaggaagatct |
735 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34945226 |
taaatatatttgaagcaaaaatacaattatttattaaattacagcaaggtttaaggatagagctcaataagagacctaaaaccaaatgtgaggaagatct |
34945325 |
T |
|
| Q |
736 |
tgtaatatttgaagccagcttgtaagaaaagttgtttccattccttttcatttctctcttttccattgaaacaggtcatcataaccacatcaagcaaaag |
835 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34945326 |
tgtaatatttgaagccagcttgtaagaaaagttgtttccattctttttcatttctctcttttccattgaaacaggtcatcataaccacatcaagcaaaag |
34945425 |
T |
|
| Q |
836 |
ctttacttctgtcatttcatgttcatcttgtttttcatttatcactgcatctatgat |
892 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34945426 |
ctttacttctgtcatttcatgttcatcttgtttttcatttatcactgcatctatgat |
34945482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 431 - 892
Target Start/End: Original strand, 34949409 - 34949882
Alignment:
| Q |
431 |
tttattgaataaaa-atatgttttagcaaatatcaatttgttacatcaaa-------gtaacttgtgcaaggcactactaaactatttgcattttatttt |
522 |
Q |
| |
|
|||||||||||||| || | ||||| |||||||||| ||| ||||||||| |||| |||||||||||||||| ||||||||||||| || |||| |
|
|
| T |
34949409 |
tttattgaataaaacatgttttttaccaaatatcaaattgatacatcaaattctgatgtaagttgtgcaaggcactacaaaactatttgcatatt-tttt |
34949507 |
T |
|
| Q |
523 |
gagaaattgatgtcacacaaattacattcttattcttg----ttattacactggttaggggccacctatatgtcacttgagttaaatataagtggctcct |
618 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||| |||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
34949508 |
gagaaattgatatcacacaaattacattcttattcttgcttcttattacactggttagaggccatctatatatcactagagttaaatatgagtggctcct |
34949607 |
T |
|
| Q |
619 |
ttattacagtccccttataaatatatttgaa-gcaaaaatacaattatttattaaattacagcaaggtttaaggatagagctcaataagagacctaaaac |
717 |
Q |
| |
|
|||||||| ||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34949608 |
ttattacaactataatataaatttataacaaagcaaaaatacaattatttattaaattacagcaaggtttaaggatagagctcaataagagacctaaaac |
34949707 |
T |
|
| Q |
718 |
caaatgtgaggaagatcttgtaatatttgaagccagcttgtaagaaaagttgtttccattccttttcatttctctcttttccattgaaacaggtcatcat |
817 |
Q |
| |
|
|||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
34949708 |
caaacgtggggaagatcttgtagtatttgaagccagcttgtaagaaaagttgtttccattccttttcatttctctcttttccattgagactggtcatcat |
34949807 |
T |
|
| Q |
818 |
aaccacatcaagcaaaagctttacttctgtcatttcatgttcatcttgtttttcatttatcactgcatctatgat |
892 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34949808 |
aaccacatcaagtaaaagctttacttctgtcatttcatgttcatcttgtttttcatttatcacaacatctatgat |
34949882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 46 - 156
Target Start/End: Original strand, 34948854 - 34948966
Alignment:
| Q |
46 |
catgagatgcgtcaaatccttactgcattgcctgttggaattggtgttttctgtagcatgctgtttgttgcatt--tcctactcatagacatggaattgg |
143 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || |||||||||| ||||||||| |
|
|
| T |
34948854 |
catgagatgcatgaattccttactgcattgcctgttggaattggtgttctgtgtagcatgctgtttgttgcattccccccactcatagacgtggaattgg |
34948953 |
T |
|
| Q |
144 |
cttcccactttca |
156 |
Q |
| |
|
|||||||||||| |
|
|
| T |
34948954 |
tttcccactttca |
34948966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 10101089 - 10101174
Alignment:
| Q |
222 |
gtacgttgaagcgtgaattctcacgtttcgatgccattctactgtgaaaatatagaagccacaaactggggcatcagactgaacgt |
307 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||||||| |||||||||||||||||||||| || |||||| |||| ||||| |
|
|
| T |
10101089 |
gtacgttgaagcgtgaattttcgtgtttcaatgccattctaccgtgaaaatatagaagccacaaattgtggcatcggactaaacgt |
10101174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 1046930 - 1046856
Alignment:
| Q |
213 |
tgtttggttgtacgttgaagcgtgaattctcacgtttcgatgccattctactgtgaaa-atatagaagccacaaa |
286 |
Q |
| |
|
||||||||||||| |||||| ||||||||| |||||||||| |||||||| | ||| |||||||||||||||| |
|
|
| T |
1046930 |
tgtttggttgtacattgaagtttgaattctcgcgtttcgatgtcattctaccattaaatatatagaagccacaaa |
1046856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 4178759 - 4178659
Alignment:
| Q |
59 |
aaatccttactgcattgcctgttggaattggtgttttctgtagcatgctgtttgttgcatttcctactcatagacatggaattggcttcccactttcaac |
158 |
Q |
| |
|
||||||| || || |||||||| | |||||| ||||| || |||||||| || ||||||||||||||| | |||||||||||||| ||||| |||||||| |
|
|
| T |
4178759 |
aaatcctcacggcgttgcctgtggcaattggcgttttttgcagcatgcttttcgttgcatttcctactgagagacatggaattgggttccccctttcaac |
4178660 |
T |
|
| Q |
159 |
a |
159 |
Q |
| |
|
| |
|
|
| T |
4178659 |
a |
4178659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 4167832 - 4167732
Alignment:
| Q |
59 |
aaatccttactgcattgcctgttggaattggtgttttctgtagcatgctgtttgttgcatttcctactcatagacatggaattggcttcccactttcaac |
158 |
Q |
| |
|
||||||| || || |||||||| | |||||| | ||| || |||||||| || ||| |||||||||| | |||||||||||||||||||| |||||||| |
|
|
| T |
4167832 |
aaatcctcacggcgttgcctgtggcaattggcgatttttgcagcatgcttttcgttacatttcctacagagagacatggaattggcttccccctttcaac |
4167733 |
T |
|
| Q |
159 |
a |
159 |
Q |
| |
|
| |
|
|
| T |
4167732 |
a |
4167732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 27554071 - 27554132
Alignment:
| Q |
220 |
ttgtacgttgaagcgtgaattctcacgtttcgatgccattctactgtgaaaatatagaagcc |
281 |
Q |
| |
|
||||||||||||| |||| ||||| |||||||||| | |||||| |||||||||||||||| |
|
|
| T |
27554071 |
ttgtacgttgaagtgtgatttctcgcgtttcgatgtcgttctaccatgaaaatatagaagcc |
27554132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University