View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11324A_high_14 (Length: 341)
Name: NF11324A_high_14
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_high_14 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 5172848 - 5173157
Alignment:
| Q |
20 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcacttatcactctggctaat |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||| |||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
5172848 |
aaattttccatccttcattagtaatctcacatccttgacattcttatcactctatgaaaattacatgcaaggatcattttcacttatcattttggctaat |
5172947 |
T |
|
| Q |
120 |
cactccaatcttcagcatctatatattttatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttccgaaatttcaattgaagt |
219 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
5172948 |
cactccaatcttcagcatctacatatttcatcgaaaaacagcactggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagt |
5173047 |
T |
|
| Q |
220 |
ccctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatataatttgattctgatggacctctctag |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5173048 |
ccctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatataatttgatactgatggacctctctag |
5173147 |
T |
|
| Q |
320 |
caacaatatt |
329 |
Q |
| |
|
|||||||||| |
|
|
| T |
5173148 |
caacaatatt |
5173157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 4842677 - 4842368
Alignment:
| Q |
20 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcacttatcactctggctaat |
119 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| |||| |||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
4842677 |
aaattttccatccttcactaccaatctcacatccttgacattcttatcactctatgaaaattacatgcaaggatcattttcacttatcaatttggctaat |
4842578 |
T |
|
| Q |
120 |
cactccaatcttcagcatctatatattttatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttccgaaatttcaattgaagt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4842577 |
cactccaatcttcagcatctatatatttcatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagt |
4842478 |
T |
|
| Q |
220 |
ccctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatataatttgattctgatggacctctctag |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4842477 |
ccctcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctacttttctttcttatcaatataatttgatagtgatggacctctctag |
4842378 |
T |
|
| Q |
320 |
caacaatatt |
329 |
Q |
| |
|
|||||||||| |
|
|
| T |
4842377 |
caacaatatt |
4842368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 24 - 301
Target Start/End: Original strand, 5159936 - 5160213
Alignment:
| Q |
24 |
tttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcacttatcactctggctaatcact |
123 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||| | | |||| |||||||||| | |
|
|
| T |
5159936 |
tttccatctttcattagcaatctcacatcactggcatacttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaatcatt |
5160035 |
T |
|
| Q |
124 |
ccaatcttcagcatctatatattttatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttccgaaatttcaattgaagtccct |
223 |
Q |
| |
|
|||||||| || ||||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
5160036 |
ccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcact |
5160135 |
T |
|
| Q |
224 |
cattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatataatttgat |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5160136 |
cattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatacaatttgat |
5160213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 5195574 - 5195853
Alignment:
| Q |
20 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcacttatcactctggctaat |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||| | | |||| |||||||| |
|
|
| T |
5195574 |
aaattttccatctttcattagcaatctcacatcactggcatacttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaat |
5195673 |
T |
|
| Q |
120 |
cactccaatcttcagcatctatatattttatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttccgaaatttcaattgaagt |
219 |
Q |
| |
|
|| ||||||||| || ||||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5195674 |
cattccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagt |
5195773 |
T |
|
| Q |
220 |
ccctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatataatttg |
299 |
Q |
| |
|
| || ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5195774 |
cacttattgttagaaattgcaacctaaacaaggacgaaggaagtgtcattcctacttttctttcatatcaatataatttg |
5195853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 5182180 - 5182483
Alignment:
| Q |
20 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcacttatcactctggctaat |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||| | | |||| |||||||| |
|
|
| T |
5182180 |
aaattttccatctttcattagcaatctcacatcactggcatacttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaat |
5182279 |
T |
|
| Q |
120 |
cactccaatcttcagcatctatatattttatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttccgaaatttcaattgaagt |
219 |
Q |
| |
|
||||| |||||||||||||||||||||| | | |||||||| ||||| | ||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
5182280 |
cactcaaatcttcagcatctatatatttcaccggaaaacagt---ggagttctcattgaaactgaaaagacaaagtggtttcccaaatttcaattgaaga |
5182376 |
T |
|
| Q |
220 |
ccctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatataatttgattctgatggacctctctag |
319 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| | |||||||||| || |
|
|
| T |
5182377 |
cactcattcttagaaattgcaacctaaacaaggagaaaggaggtgtcattcctacttttctttcatatcaatataatttgatattcttggacctctccag |
5182476 |
T |
|
| Q |
320 |
caacaat |
326 |
Q |
| |
|
|||||| |
|
|
| T |
5182477 |
aaacaat |
5182483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 5213740 - 5214042
Alignment:
| Q |
20 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcacttatcactctggctaat |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| | | ||||||| ||| |||||||||||||||||||||||||||| | | |||| |||||||| |
|
|
| T |
5213740 |
aaattttccatccttcattagtaatctcacatcactggcatacttatccctctttggaaattacatgcaaggatcattttcattgagcactttggctaat |
5213839 |
T |
|
| Q |
120 |
cactccaatcttcagcatctatatattttatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttccgaaatttcaattgaagt |
219 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| ||| || |||| | | |||||||||||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
5213840 |
cactccaatctccagcatctatatatttcatcacaaagca---ttggtgcaaacattgaaactgaaaagacaaagtggttacccaaatttcaattgaaga |
5213936 |
T |
|
| Q |
220 |
ccctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatataatttgattctgatggacctctctag |
319 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||| || || |
|
|
| T |
5213937 |
cactcattcttagaaattgcaacttaaacaaggacaaaggaagtgtcattcctacttttctttcatatcaatatagtttgatattgatggacctatccag |
5214036 |
T |
|
| Q |
320 |
caacaa |
325 |
Q |
| |
|
|||||| |
|
|
| T |
5214037 |
caacaa |
5214042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 4857150 - 4856875
Alignment:
| Q |
20 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcacttatcactctggctaat |
119 |
Q |
| |
|
||||||||||||||||| || |||||||||||| || | | || |||| |||||||||||||||||||||||||||||||| | | |||| |||||||| |
|
|
| T |
4857150 |
aaattttccatccttcactaccaatctcacatctcttgcatact-atccatctatggaaattacatgcaaggatcattttcattgaccactttggctaat |
4857052 |
T |
|
| Q |
120 |
cactccaatcttcagcatctatatattttatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttccgaaatttcaattgaagt |
219 |
Q |
| |
|
||||| |||||||||||||||||||||| | | |||||||| ||||| | ||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
4857051 |
cactcaaatcttcagcatctatatatttcaccggaaaacagt---ggagttctcattgaaactgaaaagacaaagtggtttcccaaatttcaattgaaga |
4856955 |
T |
|
| Q |
220 |
ccctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatataatttg |
299 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4856954 |
cactcattcttagaaattgcaacctaaacatggacgaaggaagtgtcattcctacttttctttcatatcaatataatttg |
4856875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 328
Target Start/End: Original strand, 7142256 - 7142419
Alignment:
| Q |
164 |
tggagtacacattgaaactgaaaaaacaaagtggtttccgaaatttcaattgaagtccctcattcttagaaattgcaacctaaacaaggacaaaggaagt |
263 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||| | ||||||| | | | || || ||| ||||||||||| ||||| ||||||||||| | |
|
|
| T |
7142256 |
tggagtacacgttgaaactgaaaatacaaagtggtttcctagatttcaactacatacacttatg-ttaaaaattgcaaccaaaacatggacaaaggaaat |
7142354 |
T |
|
| Q |
264 |
gtcattcctacttttctttcttatcaatataatttg--attctgatggacctctctagcaacaatat |
328 |
Q |
| |
|
|||||||||| |||| |||| |||||| |||||||| ||||| |||||||||| || |||||||| |
|
|
| T |
7142355 |
gtcattcctagttttttttcatatcaacataatttggcattct--tggacctctccagaaacaatat |
7142419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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