View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11324A_high_21 (Length: 299)
Name: NF11324A_high_21
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_high_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 38567093 - 38566802
Alignment:
| Q |
1 |
cagcattggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567093 |
cagcattggttggacaaagtggaagtggaaagtcgacaattatcagtttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaat |
38566994 |
T |
|
| Q |
101 |
taacatgaaagaatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38566993 |
taacatgaaagaatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttca |
38566894 |
T |
|
| Q |
201 |
tacggtaaagatggagcaacgattgaagaaataagatctgcatctgaacttgcaaacgctgccaaattcattgataaactgccacaggttct |
292 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38566893 |
tatggtaaagatggagcaacgattgaagagataagatctgcatctgaacttgcaaacgctgccaaattcattgataaactgccccaggttct |
38566802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 3 - 292
Target Start/End: Complemental strand, 38525966 - 38525677
Alignment:
| Q |
3 |
gcattggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaatta |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||| | ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
38525966 |
gcattggttggacaaagtggaagtggaaagtccacagttattagtttggtagaaagattctatgatccacaggccggtgaagtacttatcgatggaatta |
38525867 |
T |
|
| Q |
103 |
acatgaaagaatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcata |
202 |
Q |
| |
|
||||||||||| ||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
38525866 |
acatgaaagaacttcagcttaggtggatcagagggaaaattggtcttgtcagccaggagccagtgttatttgcatccagcattaaggataacattgcata |
38525767 |
T |
|
| Q |
203 |
cggtaaagatggagcaacgattgaagaaataagatctgcatctgaacttgcaaacgctgccaaattcattgataaactgccacaggttct |
292 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
38525766 |
tggtaaagatggagcaacaattgaagaaataagatctgcatccgaacttgcaaacgccgccaaattcattgataaacttccacaggttct |
38525677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 289
Target Start/End: Original strand, 51199472 - 51199755
Alignment:
| Q |
6 |
ttggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaaca |
105 |
Q |
| |
|
||||| || |||||||| |||||||| || ||| || ||| |||| |||||||||| |||||||||||||| ||||||||||| || || || | ||| |
|
|
| T |
51199472 |
ttggtagggcaaagtgggagtggaaaatccacagttgtcagtttgatagagagattttatgatccacaggctggtgaagttctcattgacggtgtcaacc |
51199571 |
T |
|
| Q |
106 |
tgaaagaatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatacgg |
205 |
Q |
| |
|
| ||||||||||| | | ||||||||| |||||| || || || |||||||| || || | ||| | | ||||||||| || |||||| |||| || |
|
|
| T |
51199572 |
tcaaagaatttcaactgaaatggatcagacagaaaataggcctagtcagccaggaacctgttctctttacttgcagcattaaagagaacattgcatatgg |
51199671 |
T |
|
| Q |
206 |
taaagatggagcaacgattgaagaaataagatctgcatctgaacttgcaaacgctgccaaattcattgataaactgccacaggt |
289 |
Q |
| |
|
|| ||||| || || ||||||||| ||| ||||| | || ||||| || ||||||||||| || |||||||| || ||||| |
|
|
| T |
51199672 |
caaggatggtgctactgatgaagaaatcagagctgcagccgagcttgctaatgctgccaaatttatagataaacttcctcaggt |
51199755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 51212627 - 51212687
Alignment:
| Q |
15 |
caaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacagg |
75 |
Q |
| |
|
|||||||| |||||||| || ||| | || |||||| |||||||||| ||||||||||||| |
|
|
| T |
51212627 |
caaagtgggagtggaaaatcaacagtgataaatttgatagagagattttatgatccacagg |
51212687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 49737396 - 49737314
Alignment:
| Q |
6 |
ttggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttct |
88 |
Q |
| |
|
||||| ||||||||||| ||||| || ||||| |||| | |||| |||||||||| ||||||||||||| |||||| |||| |
|
|
| T |
49737396 |
ttggtaggacaaagtgggagtgggaaatcgacggttattagtttgatagagagattttatgatccacagggtggtgaaattct |
49737314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University