View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_high_27 (Length: 251)
Name: NF11324A_high_27
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_high_27 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 20232632 - 20232531
Alignment:
| Q |
150 |
gctttgattcctagctcatttagagtatgttttaatcatcttgtgagatagagataaatgaagggctcaatgtttgaattcaaaatatattttatgtttg |
249 |
Q |
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| T |
20232632 |
gctttgattcctagctcatttagagtatgttttaatcatcttgtgagatagagataaatgaagggctcaatgtttgaattcaaaatatattttatgtttg |
20232533 |
T |
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| Q |
250 |
tc |
251 |
Q |
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| T |
20232532 |
tc |
20232531 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 20232771 - 20232703
Alignment:
| Q |
13 |
aatatagctgtcctattttcaagcattgattcgtaagtcagtannnnnnnatattatttgtaacatcatc |
82 |
Q |
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| T |
20232771 |
aatatagctgtcctattttcaagcattgattcgtaagtcagta-ttttttatattatttgtaacatcatc |
20232703 |
T |
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