View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_high_4 (Length: 535)
Name: NF11324A_high_4
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 6 - 527
Target Start/End: Original strand, 7722857 - 7723366
Alignment:
| Q |
6 |
agtaattctgcagagatataatagaaactcaaacacttgcttacattacacactcactccctgacttacccttcatttcatttattgcattgggtccnnn |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7722857 |
agtaattctgcagagatataatagaaactcaaacacttgcttacattacacactcactccctgacttacccttcatttcatttattgcattgggtccctc |
7722956 |
T |
|
| Q |
106 |
nnnnnnnnntatgctctataattttatctcctttactatatatattttgtatttgtatgtacatgtctccatttgcaattcacgacaacgtggactgcag |
205 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7722957 |
tctctct--tatgctttataattttatctcctttactatatatattttgtatttgtatgtacatgtctccatttgcaattcacgacaacgtggactgcag |
7723054 |
T |
|
| Q |
206 |
gtgctgactagtatttcgacattttattatcttcaaacactacaagacaacaattcactcttctctactctactctactctnnnnnnncccttcaaatca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
7723055 |
gtgctgactagtatttcgacattttattatcttcaaacactacaagacaacaattcactcttctctactctaaaaaac----------cccttcaaatca |
7723144 |
T |
|
| Q |
306 |
ttcattttccattactctttttcacaaagaatgatgcatcgttcatctcaagggcaacacgtgatgggacactgttcatgtggtatgtttcatggacaaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7723145 |
ttcattttccattactctttttcacaaagaatgatgcatcgttcatctcaagggcaacacgtgatgggacactgttcatgtggtatgtttcatggacaaa |
7723244 |
T |
|
| Q |
406 |
acaactcattctcaatgttattctcctcctctacaccttatgatcatgaacctgaaacatattgcttcactccgaattcttcatcttcttctgttgattg |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7723245 |
acaactcattctcaatgttattctcctcctctacaccttatgatcatgaacctgaaacatattgcttcactcctaattcttcatcttcttctgttgattg |
7723344 |
T |
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| Q |
506 |
tactctttcacttggaacacca |
527 |
Q |
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|||||||||||||||||||||| |
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| T |
7723345 |
tactctttcacttggaacacca |
7723366 |
T |
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