View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_103 (Length: 342)
Name: NF11324A_low_103
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_103 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 285
Target Start/End: Complemental strand, 32524959 - 32524677
Alignment:
| Q |
7 |
aatacgaagaagttttatttttggtaactacaatcaatacaaagaagttggttatgccttaacgtgcattttttat--gagttagtgggtagttacttaa |
104 |
Q |
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| T |
32524959 |
aatacgaagaagttttatttttggtaactacaatcaatacaaagaagttggttatgccttaacgtgcattttttatatgagatagtgggtagttacttaa |
32524860 |
T |
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| Q |
105 |
ttttacaaaacaaaaaggagagaaaatcgttaaagggtctttaaatggaagttaacaaaa--tgaaagtagaaatggattaggagaatagttagttatta |
202 |
Q |
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| T |
32524859 |
ttttacaaaacaaaaaggagaaaaaatcgttaaagggtctttaaatggaagttaacaaaaaatgaaagtagaaatggattaggagaatagttagttatta |
32524760 |
T |
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| Q |
203 |
acgtacacacatccttcatatctattctacgacaatatattcctactatatttagcattgtttttcataatgaaaaattaact |
285 |
Q |
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| T |
32524759 |
acgtacacacatccttcatatctattctacgacaatatattcctactatatttagcattgtttttcataatggaaaattaact |
32524677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 269 - 336
Target Start/End: Complemental strand, 32524666 - 32524599
Alignment:
| Q |
269 |
ataatgaaaaattaactaacacacgcaaagggtacttccgaaaaatcagcttcatatctaactccaaa |
336 |
Q |
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| T |
32524666 |
ataatgaaaaattaactaacacacgcaaagggtacttccgaaaaatcaggttcatatctaactccaaa |
32524599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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