View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_108 (Length: 340)
Name: NF11324A_low_108
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_108 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 38591127 - 38590812
Alignment:
| Q |
11 |
atgtttgaaataaaggtgagtttgataaaatcagtgtcaaactaacaccttgattttgatgaagttttaaagtgtacagtttttgtcaaaattgcgacta |
110 |
Q |
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| T |
38591127 |
atgtttgaaataaaggtgagtttgataaaatcagtgtcaaactaacaccttgattttgatgaagttttaaagtgtacagtttttgtcaaaattgcgacta |
38591028 |
T |
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| Q |
111 |
cacaagacgtatgttgtatttagggtgatgatttccttagaaaatagggaaaacaaaaaacttcatgc-agtattttagtgagtaataatagcttgattt |
209 |
Q |
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| T |
38591027 |
cacaagacgtatgttgtatttagggtgatgatttccttagaaaataggaaaaacaaaaaacttcatgctagtattttagtgagtaataatagcttgattt |
38590928 |
T |
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| Q |
210 |
gaaatcaacaaaggtttggttgcacaaaccttatgcagcagcttgctgaaatattaggtgtggaatctccttgattcgtcattggccagccaaatgaata |
309 |
Q |
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| T |
38590927 |
gaaatcaacaaaggtttggttggacaaaccttatgcagcagcttgctgaaatattaggtgtggaatttccttgattcatcattggccagccaaatgaata |
38590828 |
T |
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| Q |
310 |
aaacagagttctcaat |
325 |
Q |
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| T |
38590827 |
aaacaaagttctcaat |
38590812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 54 - 322
Target Start/End: Complemental strand, 38578128 - 38577858
Alignment:
| Q |
54 |
aacaccttgattttgatgaagttttaaagtgtacagtttttgtcaaaattgcgactacacaagacgtatgttgtatttagggtgatgatttccttagaaa |
153 |
Q |
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| T |
38578128 |
aacaccatgattttgatgaagttttaaaaggta--gtttttgtcaaatttgcggccacacaagacttatgttgtatttagggtgatgatttccttggaaa |
38578031 |
T |
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| Q |
154 |
atagggaaaacaaaaaac-ttcatgc-agtattttagtgagtaataatagcttgatttgaaatcaacaaa---ggtttggttgcacaaaccttatgcagc |
248 |
Q |
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| T |
38578030 |
atagtaagaacaaaaaaaattcatgctagttttttagtgagtagtaatagcttgatttgaaatcaacaaaattggtttggttgcacaatccttatgcggc |
38577931 |
T |
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| Q |
249 |
agcttgctgaaatattaggtgtggaatctccttgattcgtcattggccagccaaatgaataaaacagagttctc |
322 |
Q |
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| T |
38577930 |
gg-ttggtgaaatataaggtgtggaatttccttaattcgtcattggccagccaaatgaataaaagagagttctc |
38577858 |
T |
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