View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11324A_low_11 (Length: 478)
Name: NF11324A_low_11
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_11 |
 | |
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| [»] chr5 (16 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 23 - 478
Target Start/End: Original strand, 41287104 - 41287556
Alignment:
| Q |
23 |
aaagtatgaagccatgccaaattaatggatatgatatcccggccaagactagggttcttgtcaatgctttggcaattggaagagatccaagatatatatt |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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|
| T |
41287104 |
aaagtatgaagccatgccaaattaatggatatgatatcccggccaagactagggttcttgtcaatgcttgggcaattggaagagatccaagatat----t |
41287199 |
T |
|
| Q |
123 |
gggtcgaagctgagaatttcaaacccgagaggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaaggag |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41287200 |
gggtcgaagctgagaatttcaaacccgagaggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaaggag |
41287299 |
T |
|
| Q |
223 |
gatgtggccaggcattgccttcggcatacccaacgttgagcttcctcttgcggaattactttatcactttgattggaagcttctcaatggaatgaattgt |
322 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
41287300 |
gatgtgcccaggcattgccttcggcatacccaacgttgagcttcctcttgctgaattactttatcactttgattggaagcttctcaatggaatgaagtgt |
41287399 |
T |
|
| Q |
323 |
gaagaacttgatatgactgagtcatttgggattactgtaggaagaaaacatgacctatgattaattcctattacacgttgtccttactatttgt-ttgcc |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
41287400 |
gaagaacttgatatgactgagtcatttgggattactgtaggaagaaaacatgacctatgattaattcctattacacgttgtccttactatttgtattgcc |
41287499 |
T |
|
| Q |
422 |
aaagcaaacctgtttagtgtttaatttccatatactactttcagtaataatgtgtat |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41287500 |
aaagcaaacctgtttagtgtttaatttccatatactactttcagtaataatgtgtat |
41287556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 36 - 393
Target Start/End: Original strand, 41316951 - 41317304
Alignment:
| Q |
36 |
atgccaaattaatggatatgatatcccggccaagactagggttcttgtcaatgctttggcaattggaagagatccaagatatatattgggtcgaagctga |
135 |
Q |
| |
|
||||||||| ||||| ||||| || || |||||||| |||||| ||||||||||| ||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
41316951 |
atgccaaatcaatggttatgagattccagccaagacaagggttgctgtcaatgcttgggctattggaagagatccaag----gtattgggttgaagctga |
41317046 |
T |
|
| Q |
136 |
gaatttcaaacccgagaggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaaggaggatgtggccaggc |
235 |
Q |
| |
|
|| ||| ||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
41317047 |
gagttttaaacctgagaggtttgttaatagcccaattgatttcaaaggcacggacttcgaattcataccatttggtgctggaaggaggatgtgtccaggt |
41317146 |
T |
|
| Q |
236 |
attgccttcggcatacccaacgttgagcttcctcttgcggaattactttatcactttgattggaagcttctcaatggaatgaattgtgaagaacttgata |
335 |
Q |
| |
|
||||| || | | | ||||| |||||||| |||||||| | |||||||||||||||||||||||||||| |||||||||||| ||||||| | |||| |
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|
| T |
41317147 |
attgcatttgccttgcccaatgttgagctgcctcttgctaagttactttatcactttgattggaagcttcccaatggaatgaagaatgaagaattggata |
41317246 |
T |
|
| Q |
336 |
tgactgagtcatttgggattactgtaggaagaaaacatgacctatgattaattcctat |
393 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||| || ||||| ||||||||||| |
|
|
| T |
41317247 |
tgactgagtcatttgggattactgcaggtagaaaacacgatctatgcttaattcctat |
41317304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 37 - 395
Target Start/End: Original strand, 41305264 - 41305618
Alignment:
| Q |
37 |
tgccaaattaatggatatgatatcccggccaagactagggttcttgtcaatgctttggcaattggaagagatccaagatatatattgggtcgaagctgag |
136 |
Q |
| |
|
|||||||| |||| |||||||| || || |||||||||||| |||||||||||| ||| |||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
41305264 |
tgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagatccaaagtat----tgggttgaagctgag |
41305359 |
T |
|
| Q |
137 |
aatttcaaacccgagaggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaaggaggatgtggccaggca |
236 |
Q |
| |
|
| ||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
41305360 |
agttttaaacccgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtccgggca |
41305459 |
T |
|
| Q |
237 |
ttgccttcggcatacccaacgttgagcttcctcttgcggaattactttatcactttgattggaagcttctcaatggaatgaattgtgaagaacttgatat |
336 |
Q |
| |
|
|||| || | | || | || ||||| ||||||||||| |||||||||||| |||||||||||||||||| ||| ||||||| | ||||||||||||| |
|
|
| T |
41305460 |
ttgcatttgccttatcaaatgttgaacttcctcttgctgaattactttataactttgattggaagcttcccaacggaatgagccatcaagaacttgatat |
41305559 |
T |
|
| Q |
337 |
gactgagtcatttgggattactgtaggaagaaaacatgacctatgattaattcctatta |
395 |
Q |
| |
|
||| |||||||||||| ||| ||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
41305560 |
gaccgagtcatttgggcttagtgtaggaagaaaacacgacctatgtttgattcctatta |
41305618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 36 - 392
Target Start/End: Original strand, 41328992 - 41329344
Alignment:
| Q |
36 |
atgccaaattaatggatatgatatcccggccaagactagggttcttgtcaatgctttggcaattggaagagatccaagatatatattgggtcgaagctga |
135 |
Q |
| |
|
||||||||| ||||| ||||| ||||| || ||||| ||||| | || ||||||| ||| |||||||||||| |||| |||||||| |||||||| |
|
|
| T |
41328992 |
atgccaaatcaatgggtatgaaatcccagctaagacaagggtaatggttaatgcttgggctattggaagagattcaag----gtattgggttgaagctga |
41329087 |
T |
|
| Q |
136 |
gaatttcaaacccgagaggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaaggaggatgtggccaggc |
235 |
Q |
| |
|
|| ||| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
41329088 |
gagttttaaacctgagaggtttgttaatagtccaattgatttcaaaggcacggacttcgaattcataccatttggtgctggaagaaggatgtgtccaggt |
41329187 |
T |
|
| Q |
236 |
attgccttcggcatacccaacgttgagcttcctcttgcggaattactttatcactttgattggaagcttctcaatggaatgaattgtgaagaacttgata |
335 |
Q |
| |
|
||| | || | ||||||||| |||||||| |||||||| | |||||||||||||||||||||||||||| ||||||||||| | |||||||||||| |
|
|
| T |
41329188 |
atttcatttgccatacccaatgttgagctgcctcttgctaagttactttatcactttgattggaagcttcccaatggaatgagccatcaagaacttgata |
41329287 |
T |
|
| Q |
336 |
tgactgagtcatttgggattactgtaggaagaaaacatgacctatgattaattccta |
392 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
41329288 |
tgactgagttttttgggattactgtaggtagaaaacacgacctatgtttaattccta |
41329344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 23 - 396
Target Start/End: Original strand, 41332912 - 41333281
Alignment:
| Q |
23 |
aaagtatgaagccatgccaaattaatggatatgatatcccggccaagactagggttcttgtcaatgctttggcaattggaagagatccaagatatatatt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||| || ||||| ||||| | || ||||||| ||| |||||||||||| |||| |||| |
|
|
| T |
41332912 |
aaagtatgaagccatgccaaattaatgggtatgaaatcccagctaagacaagggtaatggttaatgcttgggctattggaagagattcaag----gtatt |
41333007 |
T |
|
| Q |
123 |
gggtcgaagctgagaatttcaaacccgagaggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaaggag |
222 |
Q |
| |
|
|||| |||||||||| ||| ||||| ||||||||||||||||| ||||||| ||||| ||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
41333008 |
gggttgaagctgagagttttaaacctgagaggtttgttaatagcacaattgaattcaaaggcacggacttcgaattcataccatttggtgctggaaggag |
41333107 |
T |
|
| Q |
223 |
gatgtggccaggcattgccttcggcatacccaacgttgagcttcctcttgcggaattactttatcactttgattggaagcttctcaatggaatgaattgt |
322 |
Q |
| |
|
|||||| || || ||||| || | | |||| ||| ||||||| |||||||| ||||||||| ||||||||||||||||||| |||| |||||| | |
|
|
| T |
41333108 |
gatgtgtcccggaattgcatttgccctaccaaacattgagctacctcttgctcaattactttgccactttgattggaagcttcccaataaaatgaagaat |
41333207 |
T |
|
| Q |
323 |
gaagaacttgatatgactgagtcatttgggattactgtaggaagaaaacatgacctatgattaattcctattac |
396 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||| || || ||||| |||||||||||||| |
|
|
| T |
41333208 |
gaagaactagatatgaccgagtcatttgggattactgtaggaagaaagcacgatctatgtttaattcctattac |
41333281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 36 - 396
Target Start/End: Original strand, 41325015 - 41325371
Alignment:
| Q |
36 |
atgccaaattaatggatatgatatcccggccaagactagggttcttgtcaatgctttggcaattggaagagatccaagatatatattgggtcgaagctga |
135 |
Q |
| |
|
||||||||| ||||| ||||| ||||| || ||||| ||||| | || ||||||| ||| ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
41325015 |
atgccaaatcaatgggtatgaaatcccagctaagacaagggtcatggttaatgcttgggctattggaagagatccaag----gtattgggttgatgctga |
41325110 |
T |
|
| Q |
136 |
gaatttcaaacccgagaggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaaggaggatgtggccaggc |
235 |
Q |
| |
|
| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| || || |
|
|
| T |
41325111 |
aagttttaaacctgagaggtttgttaatagtccaattgatttcaaaggcacagactttgaatacataccatttggtgctggaagaaggatgtgtcccgga |
41325210 |
T |
|
| Q |
236 |
attgccttcggcatacccaacgttgagcttcctcttgcggaattactttatcactttgattggaagcttctcaatggaatgaattgtgaagaacttgata |
335 |
Q |
| |
|
||||| || | | ||||||||||||| | |||||||| |||||||| ||||||||||||||||||| |||| |||||| ||||||||| |||| |
|
|
| T |
41325211 |
attgcatttgccttacccaacgttgaattgcctcttgctagtttactttaccactttgattggaagcttcccaataaaatgaagaatgaagaactagata |
41325310 |
T |
|
| Q |
336 |
tgactgagtcatttgggattactgtaggaagaaaacatgacctatgattaattcctattac |
396 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||| || | ||||| |||||||||||||| |
|
|
| T |
41325311 |
tgaccgagtcatttgggattactgcaggtagaaagcacaatctatgcttaattcctattac |
41325371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 36 - 393
Target Start/End: Complemental strand, 31177885 - 31177532
Alignment:
| Q |
36 |
atgccaaattaatggatatgatatcccggccaagactagggttcttgtcaatgctttggcaattggaagagatccaagatatatattgggtcgaagctga |
135 |
Q |
| |
|
||||||||| ||||| ||||| ||||| || || || || ||| | |||||| || |||||||||||||||| ||| ||| |||| |||||||| |
|
|
| T |
31177885 |
atgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaaggtat----tgggcagaagctga |
31177790 |
T |
|
| Q |
136 |
gaatttcaaacccgagaggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaaggaggatgtggccaggc |
235 |
Q |
| |
|
|| ||| ||||||||||||||||||||||| ||||||||||||| || ||| |||| || |||||||| || ||||||||||| || ||||| |||||| |
|
|
| T |
31177789 |
gagttttaaacccgagaggtttgttaatagcacaattgatttcaaaggtacaaactttgagtacataccgttcggtgctggaagaagaatgtgtccaggc |
31177690 |
T |
|
| Q |
236 |
attgccttcggcatacccaacgttgagcttcctcttgcggaattactttatcactttgattggaagcttctcaatggaatgaattgtgaagaacttgata |
335 |
Q |
| |
|
|| || || ||| || ||||| ||||||| |||||||| | |||||||| ||||||||||||||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
31177689 |
atggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgattggaagcttcctaatggaatgaagaatgaagaactagata |
31177590 |
T |
|
| Q |
336 |
tgactgagtcatttgggattactgtaggaagaaaacatgacctatgattaattcctat |
393 |
Q |
| |
|
||||||||||||||||| || |||||| |||||||||||||||||| || |||||||| |
|
|
| T |
31177589 |
tgactgagtcatttgggcttgctgtagtaagaaaacatgacctatgcttgattcctat |
31177532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 36 - 408
Target Start/End: Complemental strand, 31187948 - 31187580
Alignment:
| Q |
36 |
atgccaaattaatggatatgatatcccggccaagactagggttcttgtcaatgctttggcaattggaagagatccaagatatatattgggtcgaagctga |
135 |
Q |
| |
|
||||||||| ||||| ||||| ||||| || || || || ||| | |||||| || |||||||||||||||| ||| ||| |||| |||||||| |
|
|
| T |
31187948 |
atgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaaggtat----tgggcagaagctga |
31187853 |
T |
|
| Q |
136 |
gaatttcaaacccgagaggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaaggaggatgtggccaggc |
235 |
Q |
| |
|
|| ||| ||||| ||||||||| | ||||| ||||||||||||| |||||| | || ||||||||||| || ||||||||||| || ||||| |||||| |
|
|
| T |
31187852 |
gagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaattttgaatacataccgttcggtgctggaagaagaatgtgtccaggc |
31187753 |
T |
|
| Q |
236 |
attgccttcggcatacccaacgttgagcttcctcttgcggaattactttatcactttgattggaagcttctcaatggaatgaattgtgaagaacttgata |
335 |
Q |
| |
|
|| || || ||| || ||||| ||||||| |||||||| | |||||||| ||||||||||||||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
31187752 |
atggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgattggaagcttcctaatggaatgaagaatgaagaactagata |
31187653 |
T |
|
| Q |
336 |
tgactgagtcatttgggattactgtaggaagaaaacatgacctatgattaattcctattacacgttgtcctta |
408 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||| || ||||||||||| ||| ||||||| |
|
|
| T |
31187652 |
tgactgagtcatttgggatggctataggaagaaaacatgacctatgcttgattcctattactcgtcgtcctta |
31187580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 87 - 395
Target Start/End: Original strand, 41311207 - 41311511
Alignment:
| Q |
87 |
tgctttggcaattggaagagatccaagatatatattgggtcgaagctgagaatttcaaacccgagaggtttgttaatagtccaattgatttcaatggcac |
186 |
Q |
| |
|
||||| ||| ||||||||||||||||| |||||||| |||||||||| || ||||| ||||||||||||||||| ||||||| ||||| ||||| |
|
|
| T |
41311207 |
tgcttgggctattggaagagatccaag----gtattgggttgaagctgagagatttaaacctgagaggtttgttaatagcacaattgaattcaaaggcac |
41311302 |
T |
|
| Q |
187 |
agacttcgaatacataccatttggtgctggaaggaggatgtggccaggcattgccttcggcatacccaacgttgagcttcctcttgcggaattactttat |
286 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| || || ||||| || | | |||| ||| ||||||| |||||||| |||||||||| |
|
|
| T |
41311303 |
ggactttgaatacataccatttggtgctggaaggaggatgtgtcccggaattgcatttgccctaccaaacattgagctacctcttgctcaattactttac |
41311402 |
T |
|
| Q |
287 |
cactttgattggaagcttctcaatggaatgaattgtgaagaacttgatatgactgagtcatttgggattactgtaggaagaaaacatgacctatgattaa |
386 |
Q |
| |
|
| |||||||||||||||| |||| |||||| ||||||||| |||||| ||||||||||||||||||||||||| |||||||| ||||||| |||| |
|
|
| T |
41311403 |
cggtttgattggaagcttcccaataaaatgaagaatgaagaactagatatggctgagtcatttgggattactgtaggtagaaaacacgacctatatttaa |
41311502 |
T |
|
| Q |
387 |
ttcctatta |
395 |
Q |
| |
|
|| |||||| |
|
|
| T |
41311503 |
ttgctatta |
41311511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 41 - 408
Target Start/End: Original strand, 41337737 - 41338100
Alignment:
| Q |
41 |
aaattaatggatatgatatcccggccaagactagggttcttgtcaatgctttggcaattggaagagatccaagatatatattgggtcgaagctgagaatt |
140 |
Q |
| |
|
|||| ||||| ||||| ||||| || ||||| |||||| |||||||| || |||||||||||||||||||| ||| ||||| |||||||||| || |
|
|
| T |
41337737 |
aaatcaatgggtatgagatcccagctaagacaagggttgctgtcaatgtttgggcaattggaagagatccaaagtat----tgggttgaagctgagagtt |
41337832 |
T |
|
| Q |
141 |
tcaaacccgagaggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaaggaggatgtggccaggcattgc |
240 |
Q |
| |
|
| ||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
41337833 |
ttaaacctgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaattaataccatttggtgctggaagaaggatgtgtccaggtattgc |
41337932 |
T |
|
| Q |
241 |
cttcggcatacccaacgttgagcttcctcttgcggaattactttatcactttgattggaagcttctcaatggaatgaattgtgaagaacttgatatgact |
340 |
Q |
| |
|
|| | | | ||||| |||||||| |||||||| | || |||||||||||||||||||| |||| |||||||||| | ||||||||||||||||| |
|
|
| T |
41337933 |
atttgccttgcccaatgttgagctgcctcttgctaagttgctttatcactttgattggaaacttccaaatggaatgagccatcaagaacttgatatgact |
41338032 |
T |
|
| Q |
341 |
gagtcatttgggattactgtaggaagaaaacatgacctatgattaattcctattacacgttgtcctta |
408 |
Q |
| |
|
|| |||||||| ||||||| |||| ||| ||||| |||| || || |||||||| ||| ||||||| |
|
|
| T |
41338033 |
gaatcatttggacttactgttggaaaaaagcatgatgtatgtttgatccctattactcgtcgtcctta |
41338100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 36 - 408
Target Start/End: Original strand, 31225830 - 31226198
Alignment:
| Q |
36 |
atgccaaattaatggatatgatatcccggccaagactagggttcttgtcaatgctttggcaattggaagagatccaagatatatattgggtcgaagctga |
135 |
Q |
| |
|
||||||||| ||||| ||||| ||||| || || || || ||| | |||||| || |||||||||||||||| ||| ||| |||| |||||||| |
|
|
| T |
31225830 |
atgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaaggtat----tgggcagaagctga |
31225925 |
T |
|
| Q |
136 |
gaatttcaaacccgagaggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaaggaggatgtggccaggc |
235 |
Q |
| |
|
|| ||| ||||| ||||||||| | ||||| ||||||||||||| |||||| | || ||||||||||| || ||||||||||| || ||||| |||||| |
|
|
| T |
31225926 |
gagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaattttgaatacataccgttcggtgctggaagaagaatgtgtccaggc |
31226025 |
T |
|
| Q |
236 |
attgccttcggcatacccaacgttgagcttcctcttgcggaattactttatcactttgattggaagcttctcaatggaatgaattgtgaagaacttgata |
335 |
Q |
| |
|
|| || || ||| || ||||| ||||||| |||||||| | |||||||| ||||||||||||||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
31226026 |
atggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgattggaagcttcctaatggaatgaagaatgaagaactagata |
31226125 |
T |
|
| Q |
336 |
tgactgagtcatttgggattactgtaggaagaaaacatgacctatgattaattcctattacacgttgtcctta |
408 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| ||||||| || || |||||||| || ||| ||||||| |
|
|
| T |
31226126 |
tgactgagtcatttgggctttctgtaggaagaaaaaatgacctgtgcttgattcctatcactcgtcgtcctta |
31226198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 23 - 391
Target Start/End: Original strand, 41367091 - 41367455
Alignment:
| Q |
23 |
aaagtatgaagccatgccaaattaatggatatgatatcccggccaagactagggttcttgtcaatgctttggcaattggaagagatccaagatatatatt |
122 |
Q |
| |
|
|||||| ||||||||||||||| ||| ||||||||||||| || ||||| ||||| |||| ||||||| ||| |||||||||||||| || ||| | |
|
|
| T |
41367091 |
aaagtacgaagccatgccaaataaatagatatgatatcccagctaagacaagggtcattgttaatgcttgggctattggaagagatccgaggtat----t |
41367186 |
T |
|
| Q |
123 |
gggtcgaagctgagaatttcaaacccgagaggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaaggag |
222 |
Q |
| |
|
|||| || || ||| ||| || || ||||| ||| ||||||| | |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41367187 |
gggttgatgccaagagttttaagcctgagagatttcttaatagccgaattgatttcaaaggcacagactttgaatacataccatttggtgctggaaggag |
41367286 |
T |
|
| Q |
223 |
gatgtggccaggcattgccttcggcatacccaacgttgagcttcctcttgcggaattactttatcactttgattggaagcttctcaatggaatgaattgt |
322 |
Q |
| |
|
|||||| | || ||||| || | | |||||||| | ||||| ||| | || | |||||||| || |||||||||||||||| ||||||||||| | |
|
|
| T |
41367287 |
gatgtgtctgggtattgcatttgccttacccaacatagagctacctttagctcagttactttaccattttgattggaagcttccaaatggaatgaagaat |
41367386 |
T |
|
| Q |
323 |
gaagaacttgatatgactgagtcatttgggattactgtaggaagaaaacatgacctatgattaattcct |
391 |
Q |
| |
|
|||||| | |||||||| |||||||||||| || | |||||||||||||||||| |||| || |||||| |
|
|
| T |
41367387 |
gaagaattagatatgacggagtcatttgggcttgcagtaggaagaaaacatgacttatgcttgattcct |
41367455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 172 - 395
Target Start/End: Original strand, 41369921 - 41370144
Alignment:
| Q |
172 |
tgatttcaatggcacagacttcgaatacataccatttggtgctggaaggaggatgtggccaggcattgccttcggcatacccaacgttgagcttcctctt |
271 |
Q |
| |
|
||||||||| || | |||||| |||||||||||||||| ||| || ||||||||||| ||||||||| || ||| |||| ||||||||| | |||||| |
|
|
| T |
41369921 |
tgatttcaaaggtatagactttgaatacataccatttgatgcagggaggaggatgtgtccaggcattatgtttggcttacctaacgttgagttgcctctt |
41370020 |
T |
|
| Q |
272 |
gcggaattactttatcactttgattggaagcttctcaatggaatgaattgtgaagaacttgatatgactgagtcatttgggattactgtaggaagaaaac |
371 |
Q |
| |
|
|| |||||||| ||||||||||||||||||| ||||| |||||| ||||||| | ||||||||||| |||||||||||||| | || ||||||| |
|
|
| T |
41370021 |
gctagtttactttaccactttgattggaagcttcccaatgaaatgaagaatgaagaattggatatgactgaatcatttgggattacagcagtaagaaaat |
41370120 |
T |
|
| Q |
372 |
atgacctatgattaattcctatta |
395 |
Q |
| |
|
|||| |||| || |||||||||| |
|
|
| T |
41370121 |
atgatttatgcttgattcctatta |
41370144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 266 - 381
Target Start/End: Original strand, 41311682 - 41311799
Alignment:
| Q |
266 |
cctcttgcggaattactttatcactttgattggaagcttctcaatggaatgaattgtgaagaacttgatatgact--gagtcatttgggattactgtagg |
363 |
Q |
| |
|
|||||||| |||||| ||||| | |||||||| ||||||| ||||||||||||| ||||||||||||||||||| |||||||||||| ||| || || |
|
|
| T |
41311682 |
cctcttgctgaattattttatgaatttgattgaaagcttcccaatggaatgaataatgaagaacttgatatgactgagagtcatttgggcatacagtcgg |
41311781 |
T |
|
| Q |
364 |
aagaaaacatgacctatg |
381 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
41311782 |
aagaaaacatgacctatg |
41311799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 357
Target Start/End: Original strand, 41333404 - 41333497
Alignment:
| Q |
266 |
cctcttgcggaattactttatcactttgattggaagcttctcaatggaatgaattgtgaagaacttgatatgact--gagtcatttgggattac |
357 |
Q |
| |
|
|||||||| |||||| ||||| | |||||||| ||||||| ||||||||||||| ||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
41333404 |
cctcttgctgaattattttatgaatttgattgaaagcttcccaatggaatgaataatgaagaacttgatatgattgagagtcatttgggcttac |
41333497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 41329533 - 41329594
Alignment:
| Q |
268 |
tcttgcggaattactttatcactttgattggaagcttctcaatggaatgaattgtgaagaac |
329 |
Q |
| |
|
|||||| |||||||||||| |||||||||| |||||| ||||||||||||| |||||||| |
|
|
| T |
41329533 |
tcttgctgaattactttatgactttgattgaaagctttccaatggaatgaataatgaagaac |
41329594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 52 - 378
Target Start/End: Complemental strand, 17248749 - 17248427
Alignment:
| Q |
52 |
tatgatatcccggccaagactagggttcttgtcaatgctttggcaattggaagagatccaagatatatattgggtcgaagctgagaatttcaaacccgag |
151 |
Q |
| |
|
|||||||| || || ||||| |||||| ||| |||| || ||||||||||||||||| ||| |||||||| |||||||||| ||||||||| || |
|
|
| T |
17248749 |
tatgatattccagctaagacaagggttgctgttaatgtttgggcaattggaagagatcaaag----gtattgggttgaagctgagagtttcaaacctgaa |
17248654 |
T |
|
| Q |
152 |
aggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaaggaggatgtggccaggcattgccttcggcatac |
251 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| || || |||||||| || ||||||| |
|
|
| T |
17248653 |
aggttttttaatagcccaattgatttcaaaggcatgaatttcgaatacataccatttggtgctggaaggaggatttgtccgggcattgcatttggcatac |
17248554 |
T |
|
| Q |
252 |
ccaacgttgagcttcctcttgcggaattactttatcactttgattggaagcttctcaatggaatgaattgtgaagaacttgatatgactgagtcatttgg |
351 |
Q |
| |
|
||||| ||||| | |||||||| |||||||||| || |||||||||||||||| ||||| |||||| |||||| || |||||||| ||||||||||| |
|
|
| T |
17248553 |
ccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaagatctagatatgaccgagtcatttgg |
17248454 |
T |
|
| Q |
352 |
gattactgtaggaagaaaacatgacct |
378 |
Q |
| |
|
|||||| || |||||||| ||||||| |
|
|
| T |
17248453 |
gattacaataagaagaaaaaatgacct |
17248427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 62088 - 62045
Alignment:
| Q |
284 |
tatcactttgattggaagcttctcaatggaatgaattgtgaaga |
327 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
62088 |
tatcactttgattggaagcttcccaatggaatgaaatgtgaaga |
62045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 318
Target Start/End: Complemental strand, 12609840 - 12609806
Alignment:
| Q |
284 |
tatcactttgattggaagcttctcaatggaatgaa |
318 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
12609840 |
tatcactttgattggaagcttcccaatggaatgaa |
12609806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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