View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_112 (Length: 338)
Name: NF11324A_low_112
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_112 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 325
Target Start/End: Complemental strand, 43653759 - 43653447
Alignment:
| Q |
7 |
agctacacttttcaccactgctgtttcagcctcaaattcttctgctaatgctggcgttattgaagaataccttgaaaaaagcaaggccaataaggtac-n |
105 |
Q |
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| T |
43653759 |
agctacacttttcaccactgctgtttcagcctccaattcttctgctaatgctggcgttattgaagaataccttgaaaaaagcaaggccaataaggtactt |
43653660 |
T |
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| Q |
106 |
nnnnnnnaatctttcttcccttgtaagaagctaannnnnnnaccaattttatcctatgttaagaaaatcttctatttttaagcttaggtaacgtgctatc |
205 |
Q |
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| T |
43653659 |
tttttttaatctttcttcccttgtgagaagctaatttttttaccaattttatcctttgttaagaaaatcttctatttttaagcttaggtaacgtgctatc |
43653560 |
T |
|
| Q |
206 |
agctataaactcgtttatcagttatcagctatcagctataagttatttgccaagatctaaggtactaatgtaagattaatttgactgtgtgtatatggta |
305 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43653559 |
agctataaactcgtttatcagt-------tatccgctataagttatttgccaagatctaaggtactaatgtaagattaatttgactgtgtgtatatggtg |
43653467 |
T |
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| Q |
306 |
taggaattgaatgacaagaa |
325 |
Q |
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|||||||||||||||||||| |
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| T |
43653466 |
taggaattgaatgacaagaa |
43653447 |
T |
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