View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11324A_low_116 (Length: 335)
Name: NF11324A_low_116
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_116 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 15 - 335
Target Start/End: Original strand, 14538306 - 14538644
Alignment:
| Q |
15 |
atgaattgccgagttctttcattttatattttggagaatgtttaactactctttagatatttgcaaaaatgggatcttctccctttatggcgagcacagc |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14538306 |
atgaatcgccgagttctttcattttatattttggagaatgtttaactactctttagatatttgcaaaaatgggatcttctccctttatggcgagcacagc |
14538405 |
T |
|
| Q |
115 |
tgttgtgtcagtcagtctag------------------cctttatgtaggagaggaatacagaccaaggtggctgtttgattgattttgtgcagaaatag |
196 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14538406 |
tgttgtgtcagtcagtctagagaaaatctgactgtctgcctttatgtaggagaggaatacagaccaaggtggctgtttgattgattttgtgcagaaatag |
14538505 |
T |
|
| Q |
197 |
catttccgtcatctactttcgtcccccaaccattattagttgattaatgatatcagaagtaatagttctggtaatctgttgtggaattgaaagtgatata |
296 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| |
|
|
| T |
14538506 |
catttccgtcatatactttcgtcccccaaccattattagttgattaatgatatcagaagtaataattctggtaatctgttgtggaaatgaaagggatata |
14538605 |
T |
|
| Q |
297 |
tttattggaatgcttttccagttttcagcatgcccttgt |
335 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||| |||| |
|
|
| T |
14538606 |
tttcttggaatgcttttccagtttttagcatgcctttgt |
14538644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 314
Target Start/End: Original strand, 14553955 - 14554107
Alignment:
| Q |
163 |
aggtggctgtttgattgattttgtgcagaaatagcatttccgtcatctactttcgtcccccaaccattattagttgattaatgatatcaga-agtaatag |
261 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||| ||| | ||||||||| || | ||| |||| ||||||||| || | |||| ||| | ||| ||| |
|
|
| T |
14553955 |
aggtggttgtttgattgattttgtgcataaatagtattggcatcatctactatcattcccgaacccttattagtttataactgatctcacacagtcatac |
14554054 |
T |
|
| Q |
262 |
ttctggtaatctgttgtggaattgaaagtgatatatttattggaatgcttttc |
314 |
Q |
| |
|
|| ||||||| ||||||| || |||||| ||| ||||| |||| | ||||||| |
|
|
| T |
14554055 |
ttttggtaatgtgttgtgaaaatgaaagagatgtatttcttgggaggcttttc |
14554107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University