View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_117 (Length: 335)
Name: NF11324A_low_117
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_117 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 20900591 - 20900905
Alignment:
| Q |
1 |
tcagccagttgagctttttggacagctgtttgtttcactagtaagttctctctatttgttattttatgatctaagtttcttttgttatttctaagttcat |
100 |
Q |
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| T |
20900591 |
tcagccagttgagctttttggacagctgtttgtttcactagtaagttctctctatttgttattttatgatctaagtttcttttgttatttctaagttcat |
20900690 |
T |
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| Q |
101 |
ctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatgttaagtgtttaa |
200 |
Q |
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| T |
20900691 |
ctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatgttaagtgtttaa |
20900790 |
T |
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| Q |
201 |
ttaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttatagaacatatatgctgattaaaataagattt |
300 |
Q |
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| T |
20900791 |
ttaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttttagaacatatatgctgattaaaataagattt |
20900890 |
T |
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| Q |
301 |
gcttcttgtcatatg |
315 |
Q |
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| T |
20900891 |
gtttcttgtcatatg |
20900905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 90 - 315
Target Start/End: Original strand, 13950234 - 13950458
Alignment:
| Q |
90 |
tctaagttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatgt |
189 |
Q |
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| T |
13950234 |
tctaaattcatctgtcatcatcttcgcatgtccttaggtgatgtttttaaagtaaatgtgaacacaagaagcatattatttatttggaaatttattctga |
13950333 |
T |
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| Q |
190 |
taagtgtttaattaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttatagaacatatatgctgatta |
289 |
Q |
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| T |
13950334 |
tcagtgattaattaatacaatgttaaatatagtctactgtta-ccaatttacttgtctaagaaaattggacaaacatttatcgaaaatggatgctgatta |
13950432 |
T |
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| Q |
290 |
aaataagatttgcttcttgtcatatg |
315 |
Q |
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| T |
13950433 |
aaatatgatttgcttcttgtcatatg |
13950458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 90 - 315
Target Start/End: Original strand, 2374 - 2598
Alignment:
| Q |
90 |
tctaagttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatgt |
189 |
Q |
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| T |
2374 |
tctaaattcatctgtcatcatcttcgcatgtccttaggtgatgtttttaaagtaaatgtgaacacaagaagcatattatttatttggaaatttattctga |
2473 |
T |
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| Q |
190 |
taagtgtttaattaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttatagaacatatatgctgatta |
289 |
Q |
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| T |
2474 |
tcagtgattaattaatacaatgttaaatatagtctactgtta-ccaatttacttgtctaagaaaattggacaaacatttatcgaaaatggatgctgatta |
2572 |
T |
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| Q |
290 |
aaataagatttgcttcttgtcatatg |
315 |
Q |
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| T |
2573 |
aaatatgatttgcttcttgtcatatg |
2598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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