View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_118 (Length: 335)
Name: NF11324A_low_118
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_118 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 12122529 - 12122859
Alignment:
| Q |
1 |
ttgaagaggtttgtagaattttccagaatcgtctatcagtggacctaggattccagtttttgcttggtgaccggcaacttgatgctccgggattttcagc |
100 |
Q |
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| T |
12122529 |
ttgaagaggtttgtagaattttccagaatcgtctatcagtggacctaggattccagtttttgcttggtgaccggcaacttgatgctccgggattttcagc |
12122628 |
T |
|
| Q |
101 |
ttcaccattttgctactgaagctgtatctattgaacacaaataacaataaaaattgtcaaaaaagctattaaacatatgaaatcaagaattatatgaaaa |
200 |
Q |
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| T |
12122629 |
ttcaccattttgctactgaagctgtatctattgaacacaaataacaataaaaattgtcaaaaaagctattaaacatatgaaatcaagaattatatgaaaa |
12122728 |
T |
|
| Q |
201 |
gggaagagaaaaaccagaaaatgataagctgggagaggggaaacacgtgagatagaggacagactatcaaaatagagggacataatgaagattactttag |
300 |
Q |
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| T |
12122729 |
gggaagagaaaaaccagaaaatgataagctgggagaggggaaacacgtgagatagaggacagactatcaaaatagagagacataatgaagattactttag |
12122828 |
T |
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| Q |
301 |
acagaatccataaaaccaataacaccaaact |
331 |
Q |
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|||||||||||||||||||||||||| |||| |
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| T |
12122829 |
acagaatccataaaaccaataacaccgaact |
12122859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 14692048 - 14692210
Alignment:
| Q |
1 |
ttgaagaggtttgtagaattttccagaatcgtctatcagtggacctaggattccagtttttgcttggtgaccggcaacttgatgctccgggattttcagc |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||| |||||||| ||||| |||||||||||| |
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| T |
14692048 |
ttgaagaggtttgtagaactttccagaatcgtctattagaggacctaggattccgttttttgcttggtgacctgcaacttggtgctctgggattttcagc |
14692147 |
T |
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| Q |
101 |
ttcaccattttgctactgaagctgtatctattgaacacaaataacaataaaaattgtcaaaaa |
163 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
14692148 |
ttcaccattttgttactgaagctgtatccattgaacacaaataacaacaaaaattgtcaaaaa |
14692210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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