View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_122 (Length: 333)
Name: NF11324A_low_122
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_122 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 328
Target Start/End: Complemental strand, 4160258 - 4159944
Alignment:
| Q |
14 |
atgaacatgaccccaccaacatatgtcaaattgatatttccacataaattctctacaacctttggacgatcaaaaacaacacacttcaacttagaaaatg |
113 |
Q |
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||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
4160258 |
atgaacatgtccccaccaacatatgtcaaattgttacttccacataaattctctacaacctttggacgatcaaaaacaacacaagtcaacttaggaaatg |
4160159 |
T |
|
| Q |
114 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaatt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4160158 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattgcaatctttcattgccaaatt |
4160059 |
T |
|
| Q |
214 |
aatcatttttgaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgacagta |
313 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4160058 |
aatcattttggaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgacagca |
4159959 |
T |
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| Q |
314 |
aatagagtgagatct |
328 |
Q |
| |
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||||||||||||||| |
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| T |
4159958 |
aatagagtgagatct |
4159944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 4171744 - 4172034
Alignment:
| Q |
14 |
atgaacatgaccccaccaacatatgtcaaattgatatttccacataaattctctacaacctttggacgatcaaaaacaacacacttcaacttagaaaatg |
113 |
Q |
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||||||||| ||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |
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| T |
4171744 |
atgaacatgtccccaccgacatatgtcaaattgttacttccacataaattctctacaacctttggacgatcaaaaacaacacatctcaacttaggatatg |
4171843 |
T |
|
| Q |
114 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaatt |
213 |
Q |
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| T |
4171844 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgaatccaacccctcaaacacaaaattgcaatctttcaatgccaaatt |
4171943 |
T |
|
| Q |
214 |
aatcatttttgaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaa |
304 |
Q |
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||||||||| ||||||||||||| |||||||||| | ||| ||||||| ||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
4171944 |
aatcattttggaatcactagccatagcatcattgaacaatctattatattcaggatttttgttaagaaactcccataaatcacatcctaaa |
4172034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 4177368 - 4177641
Alignment:
| Q |
15 |
tgaacatgaccccaccaacatatgtcaaattgatatttccacataaattctctacaacctttggacgatcaaaaacaacacacttcaacttagaaaatgt |
114 |
Q |
| |
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|||||||| ||||||||||||| |||||||| | ||||| |||| ||||||||||| | ||| | |||||| |||| ||| |||||||||| ||| || |
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| T |
4177368 |
tgaacatgtccccaccaacataagtcaaattattgcttccagataagttctctacaacttgtggcctatcaaacacaatacatttcaacttaggaaaagt |
4177467 |
T |
|
| Q |
115 |
ctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaatta |
214 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||| ||| |||||| || |
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| T |
4177468 |
ctcacaaataattttaccagtggttccatttccaccaccaacatccacaattgattccaatccatcaaacacaaaatcacaatctctcaatgccaagttt |
4177567 |
T |
|
| Q |
215 |
atcatttttgaatcactagccaaagcatcattgtataatgtattatactcagggtttttgttaagaaactccca |
288 |
Q |
| |
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|||| ||| ||||||||||||| |||||||| || || ||||||| ||||| ||||| | |||||| ||||| |
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|
| T |
4177568 |
atcaatttagaatcactagccattgcatcattaaatgatctattatattcaggatttttatcaagaaaatccca |
4177641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 34343695 - 34343525
Alignment:
| Q |
66 |
ctacaacctttggacgatcaaaaacaacacacttcaacttagaaaatgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaat |
165 |
Q |
| |
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||||||||| |||| ||||| |||||||||| |||||||||| ||| | |||||| ||||| || | || |||||| |||||||||||||||||||||| |
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| T |
34343695 |
ctacaacctgtggaagatcataaacaacacatttcaacttaggaaaagcctcacatataattctagctgtggttccagttccaccaccaacatccacaat |
34343596 |
T |
|
| Q |
166 |
tgattccaacccctcaaacaccaaattacaatctttcattgccaaattaatcatttttgaatcactagcca |
236 |
Q |
| |
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|| || | ||| ||||||||| | |||||| ||||| |||||||| | ||||| ||||||||||||| |
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| T |
34343595 |
agaatcaatcccttcaaacaccttactacaatttttcaaagccaaattcaccatttgagaatcactagcca |
34343525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 34331071 - 34330971
Alignment:
| Q |
83 |
tcaaaaacaacacacttcaacttagaaaatgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaa |
182 |
Q |
| |
|
|||||||||| ||| || | ||||| ||| | |||||| ||||| ||| | || ||||||||||||||||||||||||||||| ||||| | |||||||| |
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| T |
34331071 |
tcaaaaacaagacatttgaccttaggaaaagcctcacatataattttagccgtcgttccatttccaccaccaacatccacaatagattctatcccctcaa |
34330972 |
T |
|
| Q |
183 |
a |
183 |
Q |
| |
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| |
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| T |
34330971 |
a |
34330971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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