View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_126 (Length: 329)

Name: NF11324A_low_126
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_126
NF11324A_low_126
[»] chr1 (4 HSPs)
chr1 (1-328)||(49952468-49952795)
chr1 (165-246)||(4644012-4644093)
chr1 (165-247)||(18575538-18575619)
chr1 (94-126)||(18575641-18575673)
[»] chr4 (3 HSPs)
chr4 (74-263)||(11696363-11696551)
chr4 (165-245)||(5587653-5587732)
chr4 (165-261)||(16598500-16598595)
[»] chr5 (4 HSPs)
chr5 (70-263)||(27994583-27994769)
chr5 (184-260)||(5302069-5302145)
chr5 (167-263)||(22931356-22931452)
chr5 (137-244)||(5589200-5589307)
[»] chr7 (2 HSPs)
chr7 (94-260)||(49052307-49052471)
chr7 (95-128)||(23022321-23022354)
[»] scaffold0200 (1 HSPs)
scaffold0200 (140-217)||(25779-25856)
[»] chr3 (2 HSPs)
chr3 (139-245)||(50174026-50174132)
chr3 (164-237)||(9193250-9193323)
[»] chr2 (1 HSPs)
chr2 (165-214)||(10836761-10836810)
[»] chr6 (1 HSPs)
chr6 (92-128)||(34086704-34086740)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 49952795 - 49952468
Alignment:
Q  1 tagtattaggcatcatgatatagattaatggagccctaaatcaattcatatatttcatatatgtgcatggaggtattcttgcttagatacgaacccaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  49952795 tagtattaggcatcatgatatagattaatggagccctaaatcaattcatatatttcatatatgtgcatggaggtattcttgcttggatacaaacccaaat 49952696  T
Q  101 aaatatatttgggcacacacacaaaaccnnnnnnntataaaagagaatgaaattgaacagtgctaattgatatgactaaatacttttacttaaattttgt 200  Q
    ||||||||||| ||| ||||||||||||       |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  49952695 aaatatatttgagcatacacacaaaaccaaaaaaatataaaagagaatgaaattgaatagtgctaattgatgtgactaaatacttttacttaaattttgt 49952596  T
Q  201 tcatttaatgtgagagtacctaaatgatatttatttgtgattgtgtccgtacaagattttctctatgtccatgctgcctcattgctttgtatactttcta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49952595 tcatttaatgtgagagtacctaaatgatatttatttgtgattgggtccgtacaagattttctctatgtccatgatgcctcattgctttgtatactttcta 49952496  T
Q  301 tttatagttccattttctttttcagatg 328  Q
    ||||||||||||||||||||||||||||    
T  49952495 tttatagttccattttctttttcagatg 49952468  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 4644093 - 4644012
Alignment:
Q  165 aattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttgtgattgtgt 246  Q
    |||||||||||||||||| |||| ||||||||||| ||||||| | | ||||| ||||||||||||| || |||||||||||    
T  4644093 aattgatatgactaaatattttttcttaaattttgctcatttagtataagagtgcctaaatgatattgatatgtgattgtgt 4644012  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 18575619 - 18575538
Alignment:
Q  165 aattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttgtgattgtgtc 247  Q
    ||||||| ||| ||||||||||| |||||||||| ||||| | || |||| || ||||||  |||||||||||||||||||||    
T  18575619 aattgatttgattaaatactttttcttaaatttt-ttcatatcatatgagggtgcctaaacaatatttatttgtgattgtgtc 18575538  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 18575673 - 18575641
Alignment:
Q  94 cccaaataaatatatttgggcacacacacaaaa 126  Q
    ||||||||||||||||||||||| |||||||||    
T  18575673 cccaaataaatatatttgggcactcacacaaaa 18575641  T

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Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 74 - 263
Target Start/End: Original strand, 11696363 - 11696551
Alignment:
Q  74 tattcttgcttagatacgaacccaaataaatatatttgggcacacacacaaaaccnnnnnnntataaaagagaatgaaattgaacagtgctaattgatat 173  Q
    ||||||| ||| ||||| |||||||||| |||| ||| | |||||||||||||||       ||||||||||||| |||||||| |||||| |||||| |    
T  11696363 tattcttacttggatacaaacccaaatagatatgttttg-cacacacacaaaaccaaaaaaatataaaagagaataaaattgaatagtgctgattgatgt 11696461  T
Q  174 gactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttgtgattgtgtccgtacaagattttctc 263  Q
     |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||    
T  11696462 aactaaatacttttacttaaattttgttcgtttaatgtgagagtgcctaaatgatatttatttgtgattgtgtctatacaagattttctc 11696551  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 5587732 - 5587653
Alignment:
Q  165 aattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttgtgattgtg 245  Q
    ||||||| |||||||||| |||| |||||||||| ||||||| ||||||| || ||||||  |||||||||||||||||||    
T  5587732 aattgatttgactaaatattttttcttaaatttt-ttcatttcatgtgagggtgcctaaacaatatttatttgtgattgtg 5587653  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 261
Target Start/End: Complemental strand, 16598595 - 16598500
Alignment:
Q  165 aattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttgtgattgtgtccgtacaagattttc 261  Q
    ||||||| | ||||||||||||| ||| |||||| ||||||| || |||| ||  |||||  ||||| |||||||||||||||| |  |||||||||    
T  16598595 aattgatttaactaaatacttttcctttaatttt-ttcatttcatatgagggtgtctaaacaatattcatttgtgattgtgtccatgaaagattttc 16598500  T

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Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 70 - 263
Target Start/End: Complemental strand, 27994769 - 27994583
Alignment:
Q  70 gaggtattcttgcttagatacgaacccaaataaatatatttgggcacacacacaaaaccnnnnnnntataaaagagaatgaaattgaacagtgctaattg 169  Q
    |||||||| |||||| ||||| || | |||||||||||||| |||||||||| ||||||       ||||||||||||| |||||||| ||||||||||     
T  27994769 gaggtatttttgcttggatacaaatctaaataaatatatttaggcacacacaaaaaaccaataaaatataaaagagaataaaattgaatagtgctaatta 27994670  T
Q  170 atatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttgtgattgtgtccgtacaagattttctc 263  Q
    |||||| ||||||||||||||||||||||||||||      ||||||| |||||||||||||||||| ||||||||| | ||||||||||||||    
T  27994669 atatgattaaatacttttacttaaattttgttcat------tgagagtgcctaaatgatatttatttatgattgtgt-catacaagattttctc 27994583  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 5302069 - 5302145
Alignment:
Q  184 ttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttgtgattgtgtccgtacaagatttt 260  Q
    |||| ||||||||||| ||||||||||||||||| ||||||| | ||| |||||||| | || || |||||||||||    
T  5302069 tttttcttaaattttgctcatttaatgtgagagtgcctaaataacattgatttgtgactatgcccatacaagatttt 5302145  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 22931452 - 22931356
Alignment:
Q  167 ttgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttgtgattgtgtccgtacaagattttctc 263  Q
    ||||| |||||||||| ||||  || ||||||||| |||| ||||||| ||| | |||| ||||||||||| | |||||||| |  |||||||||||    
T  22931452 ttgatgtgactaaatattttttgtttaattttgttaattttatgtgagtgtatccaaataatatttatttggggttgtgtccatgaaagattttctc 22931356  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 244
Target Start/End: Original strand, 5589200 - 5589307
Alignment:
Q  137 ataaaagagaatgaaattgaacagtgctaattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttattt 236  Q
    |||||||||||  |||||||| | ||  | ||||| ||| |||||| ||||  || |||||| ||||||| ||||||| || ||||||| ||||||||||    
T  5589200 ataaaagagaacaaaattgaataatgtcatttgatttgattaaatattttttttttaatttttttcatttcatgtgagggtgcctaaataatatttattt 5589299  T
Q  237 gtgattgt 244  Q
     |||||||    
T  5589300 atgattgt 5589307  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 260
Target Start/End: Complemental strand, 49052471 - 49052307
Alignment:
Q  94 cccaaataaatatatttgggcacacacacaaaaccnnnnnnntataaaagagaatgaaattgaacagtgctaattgatatgactaaatactttta--ctt 191  Q
    |||||||||||||||||  ||||||||||||||||        |||||| ||| | |||||||| | ||  ||||||| |||||||||| ||||   |||    
T  49052471 cccaaataaatatattttagcacacacacaaaaccaaaa----ataaaatagagtaaaattgaataatgtcaattgatgtgactaaatattttttttctt 49052376  T
Q  192 aaattttgttcatttaatgtgagagtacctaaatgatatttatttgtgattgtgtccgtacaagatttt 260  Q
    ||| |||  ||||||||||||| || |||||||||||||| |||||||||||||||| |||||||||||    
T  49052375 aaactttactcatttaatgtgaaaggacctaaatgatattgatttgtgattgtgtccatacaagatttt 49052307  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 23022354 - 23022321
Alignment:
Q  95 ccaaataaatatatttgggcacacacacaaaacc 128  Q
    ||||||||||||||||||||||||||| ||||||    
T  23022354 ccaaataaatatatttgggcacacacataaaacc 23022321  T

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Target: scaffold0200 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 25856 - 25779
Alignment:
Q  140 aaagagaatgaaattgaacagtgctaattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagt 217  Q
    |||| |||| |||||||| | ||  |||||||||||||||||| |||| ||||||||||| |||||||||||||||||    
T  25856 aaagtgaataaaattgaataatgtcaattgatatgactaaatattttttcttaaattttgctcatttaatgtgagagt 25779  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 50174026 - 50174132
Alignment:
Q  139 aaaagagaatgaaattgaacagtgctaattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttgt 238  Q
    |||||||||| |||||||| | ||  ||||||| |||||||||  |||| |||||||||||||||||| | ||||| || ||||||| | ||| ||||||    
T  50174026 aaaagagaataaaattgaataatgtcaattgatgtgactaaattatttttcttaaattttgttcatttcacgtgagtgtgcctaaataagattgatttgt 50174125  T
Q  239 gattgtg 245  Q
    | |||||    
T  50174126 ggttgtg 50174132  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 9193250 - 9193323
Alignment:
Q  164 taattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttg 237  Q
    ||||||||||| ||||||||||||  || | |||| || |||| ||||||| ||| |||||| |||||||||||    
T  9193250 taattgatatggctaaatactttttatttagttttattgatttcatgtgagtgtatctaaataatatttatttg 9193323  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 10836810 - 10836761
Alignment:
Q  165 aattgatatgactaaatacttttacttaaattttgttcatttaatgtgag 214  Q
    |||||||||||||||||||||||  || ||||||||| |||| |||||||    
T  10836810 aattgatatgactaaatactttttatttaattttgttaattttatgtgag 10836761  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 34086740 - 34086704
Alignment:
Q  92 aacccaaataaatatatttgggcacacacacaaaacc 128  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  34086740 aacccaaataaaaatatttgggtacacacacaaaacc 34086704  T

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