View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_13 (Length: 461)
Name: NF11324A_low_13
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 14 - 452
Target Start/End: Original strand, 32350647 - 32351102
Alignment:
| Q |
14 |
gaactggttcaatgatacgggttgggtttgttttggtctatggatttttgttgcagattttgcaattcgtgataattcttgtcgcacagattcaaaggat |
113 |
Q |
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| T |
32350647 |
gaactggttcaatgatacgggttgggtttgttttggtctatggatttttgttgcagattttgcaattcgtgataattcttgtcgcacagattcaaaggat |
32350746 |
T |
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| Q |
114 |
tttgccatgaaaataaacaaaagacaagat-------------gaaactggtttgttgttatctaagacagatattatcaaacatgaaggatgcaactag |
200 |
Q |
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| T |
32350747 |
tttgccatgaaaataaacaaaagacaagatgaaatgagtagatgaaactggtttgttgttatctaagacagatattatcaaacatgtaggatgcaactag |
32350846 |
T |
|
| Q |
201 |
atatattttgttacaattcgaggtgtatttcgcaagaacacattgttttttgtttgacaaggtaacacatatcgagctcgggcctagttgaaaatttatg |
300 |
Q |
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| T |
32350847 |
atatattttgttacaattcgaggtgtatttcgcaagaacacattgttttttgtttgacaaggta--acatatcgagctcgggcctagttgaaaatttatg |
32350944 |
T |
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| Q |
301 |
agaatggattggaggacctt------gtggacatggtttggttcacgaggaaaaccaaaccaaattgaaccggattcttttcaaaactcataataattga |
394 |
Q |
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| T |
32350945 |
agaatggattggaggaccttgctagggtggacatggtttggttcacgaggaaaaccaaaccaaattgaaccggattcttttcaaaactcataataattga |
32351044 |
T |
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| Q |
395 |
aatgaaccctttgcattttaatccggaccaaattgctatttataatggttcggatata |
452 |
Q |
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| T |
32351045 |
aatgaaccctttgcattttaatccggaccaaattgctattcataatggttcggatata |
32351102 |
T |
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