View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_131 (Length: 324)
Name: NF11324A_low_131
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_131 |
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| [»] scaffold0288 (1 HSPs) |
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| [»] scaffold0475 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 49330853 - 49330543
Alignment:
| Q |
1 |
ggaggaatagatacaaaacaacaaatcaacttattcattgatatcctcctagtcaacacatgtgatgtattaattcccttcttgcgaacggcatagtaac |
100 |
Q |
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|||||||||||||||||||||||| ||||||| |||||| |||||| ||| |||||||||||||||||| ||||||||||||||||| |||| |||| |
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| T |
49330853 |
ggaggaatagatacaaaacaacaattcaacttgttcattactatcct---agttaacacatgtgatgtattacttcccttcttgcgaacgacatactaac |
49330757 |
T |
|
| Q |
101 |
ataaaccaagcattataattttcctttgtaatttttcgacattgttttgctaaattcttcaaataaaaaacagcgaaattgttcagttgagttgcttata |
200 |
Q |
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||||||| | |||||||||||||||||||| ||||| ||| |||||||||||||| | || ||||||||||||||||||||||| |||||||||||||| |
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| T |
49330756 |
ataaacctaagattataattttcctttgtaacttttccacactgttttgctaaattttacatataaaaaacagcgaaattgttcaattgagttgcttata |
49330657 |
T |
|
| Q |
201 |
ttacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgcttatgattccgctatttcag |
300 |
Q |
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| T |
49330656 |
tttcagtttcaccatccaatttgattctcaagtctgtgctacctaccgattcggaaaaaatgtagagcatcacgatttgcttctg----tgccattttag |
49330561 |
T |
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| Q |
301 |
cttcatcaatttcataga |
318 |
Q |
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|||||||||||||||||| |
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| T |
49330560 |
cttcatcaatttcataga |
49330543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 184 - 317
Target Start/End: Original strand, 4660393 - 4660526
Alignment:
| Q |
184 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
283 |
Q |
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| T |
4660393 |
cagttgagttgcttatattacaacttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
4660492 |
T |
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| Q |
284 |
tgattccgctatttcagcttcatcaatttcatag |
317 |
Q |
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| T |
4660493 |
tgattccgctattttagcttcatcaatttcatag |
4660526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 184 - 314
Target Start/End: Original strand, 20558 - 20688
Alignment:
| Q |
184 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
283 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||| |||||||||| || |||| |||||| ||||||||||||||||||| ||||||||||| |
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| T |
20558 |
cagtggagttgcttatattacaacttccccatccaatttgataatcaagtctgggccacctcctgatttgggaaaaatgtagagcatcccgatttgctta |
20657 |
T |
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| Q |
284 |
tgattccgctatttcagcttcatcaatttca |
314 |
Q |
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|||||||||||||| ||||| ||||| |||| |
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| T |
20658 |
tgattccgctattttagctttatcaaattca |
20688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 7691 - 7771
Alignment:
| Q |
184 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgta |
264 |
Q |
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|||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
7691 |
cagttgagttgcttatattacaacttccccctccgatttgattatcaagtctgtgctacctcctgattcaggaaaaatgta |
7771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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