View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_132 (Length: 324)
Name: NF11324A_low_132
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_132 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 43611775 - 43612079
Alignment:
| Q |
14 |
agaagcgataaataacaatgacaatgaacacaatcatttgtttatgcaatttggtccagtgtgcctacatctgcgactatagagcagctgtagtcctgta |
113 |
Q |
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| T |
43611775 |
agaagcgataaataacaatgacaatgaacacaatcatttgtttatgcaatttggtccagtgtgcctacatctgcgactatagagcagctgtagtcctgta |
43611874 |
T |
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| Q |
114 |
ttattacagtgttacaattacaaacaatatatataagactacagtccagattacaacaatacccctgaaccgcaccgcctcactcactcagctcccctgc |
213 |
Q |
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| T |
43611875 |
ttattgcagtgttacaattacaaaccatatatataagactacggtccagattacaacaatacccctgaatcgcaccgtctcactcactcagctcccctgc |
43611974 |
T |
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| Q |
214 |
cccttgccctattatatgcttatgagccatactgaacatatcagtactaatgttgaacaaagtgttggttgtttgaaatgaatataggaaattgatagta |
313 |
Q |
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| T |
43611975 |
cccttgccctattatatgcttatgagccatactgaacatatcagtactaatgttgaataaagtgttggttgtttgaaatgaatataggaaattgatagta |
43612074 |
T |
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| Q |
314 |
cttac |
318 |
Q |
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||||| |
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| T |
43612075 |
cttac |
43612079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 34940234 - 34940182
Alignment:
| Q |
131 |
ttacaaacaatatatataagactacagtccagattacaacaatacccctgaac |
183 |
Q |
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| T |
34940234 |
ttacaagccatatatatagtactacggtccagattagaacaatacccctgaac |
34940182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 27407245 - 27407329
Alignment:
| Q |
33 |
gacaatgaacacaatcatttgtttatgcaatttggtccagtgtgcctacatctgcgactatagagcagctgtagtcctgtattattac |
120 |
Q |
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| T |
27407245 |
gacaataaacacaattatttgattacacaatttggccaagtgt---tacatctgcgactgtagagaagctatagtcctgtattattac |
27407329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 32349735 - 32349776
Alignment:
| Q |
140 |
atatatataagactacagtccagattacaacaatacccctga |
181 |
Q |
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| T |
32349735 |
atatatataatactacggtccagattacaacaatgcccctga |
32349776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 24491 - 24459
Alignment:
| Q |
75 |
tgcctacatctgcgactatagagcagctgtagt |
107 |
Q |
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| T |
24491 |
tgcctacctctgcgactatagagcagctgtagt |
24459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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