View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_133 (Length: 323)
Name: NF11324A_low_133
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_133 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 303
Target Start/End: Complemental strand, 34444337 - 34444044
Alignment:
| Q |
10 |
aagaaaattccatactatcattctcattccttggtgtagcagcattgctaataacttcaaacggtgctttatagccatctccactaacatcaatttttga |
109 |
Q |
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||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34444337 |
aagaaaaatccaaactaacattctcattccttggtgtagcagcattgctaataacttcaaacggtgctttatagccatctccactaacatcaatttttga |
34444238 |
T |
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| Q |
110 |
agaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccattaaatgaaccaatg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34444237 |
agaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccattaaatgaaccaatg |
34444138 |
T |
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| Q |
210 |
tcccatcttttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcggagataa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34444137 |
tcccatcttttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcggagataa |
34444044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 303
Target Start/End: Complemental strand, 34437590 - 34437297
Alignment:
| Q |
10 |
aagaaaattccatactatcattctcattccttggtgtagcagcattgctaataacttcaaacggtgctttatagccatctccactaacatcaatttttga |
109 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||| |||||||| |
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| T |
34437590 |
aagaaaattccaaactatcattctcattccttggtgtagcagcattcctaataacttcaaatggtggtttatagccatctccactaacatctatttttga |
34437491 |
T |
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| Q |
110 |
agaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccattaaatgaaccaatg |
209 |
Q |
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||||||| |||||||||||||||||||||| || | |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34437490 |
agaagtgcttatagatttccatgaagaggatttaagaggaaaccaaattctatcataaacatcatcttgatatctaccacttccattaaatgaaccaatg |
34437391 |
T |
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| Q |
210 |
tcccatcttttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcggagataa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| || ||||||| |
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| T |
34437390 |
tcccatcttttgaaaagtaacaatgaagcagaatcaccaaactcagttttataaatagagttatcaattggtctaagttccaatgctgagataa |
34437297 |
T |
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