View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11324A_low_136 (Length: 319)
Name: NF11324A_low_136
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_136 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 26976107 - 26976404
Alignment:
| Q |
18 |
aaggtccatgtattcaatatactcaagtcactttagcacaaagttcaaagatccataaactatatatgatg-tttaaacatcataatatgtttaagatat |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26976107 |
aaggtccatgtattcaatgtactcaagtcactttagcacaaagttcaaagatccataaactatttatgatggtttaaacatcataatatgtttaagatat |
26976206 |
T |
|
| Q |
117 |
taaaataaaccttagaattaaccataccaattatttgagaagaaacaaactcactctcctagaaaatttggttgctctttaagcatgaagagcaaatcaa |
216 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
26976207 |
taaaatacaccttagaattaaccataacaattatttgagaagaaacaaactcactctcctagaaaatttgtttgctctttaagcatgaagag-----caa |
26976301 |
T |
|
| Q |
217 |
agagattaattacacataaaactctatttaagtgcatgtttaaattgacaataacattgacagagtcacgatacgctatagtgattttgacaaaattata |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
26976302 |
agagattaattacacataaaactctatttaagtgcatgtttaaattaacaataacattgacagagtcacgatacgctacagtgattttgacaaaactata |
26976401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University