View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_14 (Length: 458)

Name: NF11324A_low_14
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_14
NF11324A_low_14
[»] chr4 (11 HSPs)
chr4 (1-450)||(39082080-39082529)
chr4 (120-450)||(39087853-39088183)
chr4 (109-444)||(39091233-39091568)
chr4 (99-450)||(39070774-39071125)
chr4 (1-94)||(39086820-39086913)
chr4 (146-336)||(39097556-39097746)
chr4 (114-211)||(39080265-39080362)
chr4 (275-311)||(7615241-7615277)
chr4 (145-210)||(39075094-39075159)
chr4 (275-311)||(7637055-7637091)
chr4 (275-311)||(7656229-7656265)
[»] scaffold0190 (1 HSPs)
scaffold0190 (178-311)||(4356-4489)
[»] chr8 (2 HSPs)
chr8 (244-311)||(15745033-15745100)
chr8 (215-266)||(15196291-15196342)
[»] chr7 (1 HSPs)
chr7 (270-311)||(8936184-8936225)


Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 39082080 - 39082529
Alignment:
Q  1 accaaataattgaaacagcaaagttacatatcctgaaatattgttcactcaagcatatcctaaacaatttcagaccagaaaaattgtaaatagccagaaa 100  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39082080 accaaataattgaaacagcaaagtgacatatccttaaatattgttcacccaagcatatcctaaacaatttcagaccagaaaaattgtaaatagccagaaa 39082179  T
Q  101 aaataccagtcagattacttagaactaggaaccaaggactcggcatcatttcccaaagcctccaatatctcgaaagaaagacaaacttcaatatcaatgc 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39082180 aaataccagtcagattacttagaactaggaaccaagaactcggcatcatttcccaaagcctccaatatctcgaaagaaagacaaacttcaatatcaatgc 39082279  T
Q  201 taccttcttcagctccagcatacacagtaatcttcccattacttttatttgaacccccacttcgaacccctaccggcttcccccaaccaaaatcattacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39082280 taccttcttcagctccagcatacacagtaatcttcccattacttttatttgaacccccacttcgaacccctaccggcttcccccaaccaaaatcattacc 39082379  T
Q  301 ataaacatcaatcctctgagaaccactcgtcgccaatgaattgctacctgccaaattaccaatttcaaataacttcggcattctcaaccaatactcataa 400  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  39082380 ataaacatcaaacctctgagaactactcgtcgccaatgaattgctacctgccaaattaccaacttcaaataacttcggcattctcaaccaacactcataa 39082479  T
Q  401 tcatcccttattttctcatcagaatgcaacataatcatcttgttcatctc 450  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39082480 tcatcccttattttctcatcagaacgcaacataatcatcttgttcatctc 39082529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 120 - 450
Target Start/End: Original strand, 39087853 - 39088183
Alignment:
Q  120 tagaactaggaaccaaggactcggcatcatttcccaaagcctccaatatctcgaaagaaagacaaacttcaatatcaatgctaccttcttcagctccagc 219  Q
    ||||||||||||||| | |||| ||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  39087853 tagaactaggaaccatgaactcagcatcatttcccaaagcctccaaaatctcataagaaagacaaacttcaatatcaatgctaccttcgtcagctccagc 39087952  T
Q  220 atacacagtaatcttcccattacttttatttgaacccccacttcgaacccctaccggcttcccccaaccaaaatcattaccataaacatcaatcctctga 319  Q
    | |||||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||  ||    
T  39087953 aaacacagtaatcttcccattacttttattcgcacccccgcttcgaacccctacaggcttcccccaaccaaaatcattatcataaacatcaaaccttgga 39088052  T
Q  320 gaaccactcgtcgccaatgaattgctacctgccaaattaccaatttcaaataacttcggcattctcaaccaatactcataatcatcccttattttctcat 419  Q
    |||| |||||| |||||||||||   |||||||||| ||  |||  |||| ||||| |||||| |||||||| |||||||||||||||||||||||||||    
T  39088053 gaactactcgtagccaatgaattagcacctgccaaactattaatcccaaacaactttggcattttcaaccaacactcataatcatcccttattttctcat 39088152  T
Q  420 cagaatgcaacataatcatcttgttcatctc 450  Q
    ||||| | |||||||||||||||||||||||    
T  39088153 cagaacgtaacataatcatcttgttcatctc 39088183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 109 - 444
Target Start/End: Original strand, 39091233 - 39091568
Alignment:
Q  109 gtcagattacttagaactaggaaccaaggactcggcatcatttcccaaagcctccaatatctcgaaagaaagacaaacttcaatatcaatgctaccttct 208  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||  |||||||||||||||||| ||| ||||||||||||    
T  39091233 gtcacattacttagaactaggaaccaagaactcagcatcatttcccaaagcctccaaaatctcataagaaagacaaacttcaacatctatgctaccttct 39091332  T
Q  209 tcagctccagcatacacagtaatcttcccattacttttatttgaacccccacttcgaacccctaccggcttcccccaaccaaaatcattaccataaacat 308  Q
    ||| | |||||| |||| |||||||| |||||| | ||||| | ||| || | || |||||| || |||||||||||||||||||||||||| |||||||    
T  39091333 tcaaccccagcaaacacggtaatctttccattattcttattcgcacctccgcatctaacccccacaggcttcccccaaccaaaatcattaccgtaaacat 39091432  T
Q  309 caatcctctgagaaccactcgtcgccaatgaattgctacctgccaaattaccaatttcaaataacttcggcattctcaaccaatactcataatcatccct 408  Q
    ||| |||| |||||| ||| ||  |||| | ||| | ||| | ||||  | ||||  |||| | ||||||||||||||||||| ||||||| | ||||||    
T  39091433 caaacctcggagaactacttgttcccaacgtattaccacccgtcaaaacatcaatcccaaaaatcttcggcattctcaaccaacactcatagtaatccct 39091532  T
Q  409 tattttctcatcagaatgcaacataatcatcttgtt 444  Q
    ||||||||||||||||||  ||||||||||||||||    
T  39091533 tattttctcatcagaatgtgacataatcatcttgtt 39091568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 99 - 450
Target Start/End: Original strand, 39070774 - 39071125
Alignment:
Q  99 aaaaataccagtcagattacttagaactaggaaccaaggactcggcatcatttcccaaagcctccaatatctcgaaagaaagacaaacttcaatatcaat 198  Q
    |||| ||| ||||| ||||||||||| | ||||||||| ||||  |||||||| ||||||||||||| |||||  |||||||||||| ||||| ||| ||    
T  39070774 aaaattacaagtcacattacttagaaattggaaccaagaactcaacatcatttgccaaagcctccaaaatctcataagaaagacaaatttcaacatctat 39070873  T
Q  199 gctaccttcttcagctccagcatacacagtaatcttcccattacttttatttgaacccccacttcgaacccctaccggcttcccccaaccaaaatcatta 298  Q
     |||||||||||||| |||||| | ||| |||| || |||||| | |||||   || ||||||||||||| | || ||||| ||||| |||||||||||     
T  39070874 actaccttcttcagcaccagcaaaaacactaatttttccattattcttattaccactcccacttcgaaccgccactggctttccccagccaaaatcattg 39070973  T
Q  299 ccataaacatcaatcctctgagaaccactcgtcgccaatgaattgctacctgccaaattaccaatttcaaataacttcggcattctcaaccaatactcat 398  Q
    ||| ||||||||| |||| ||||||  ||  | |||||   ||| | ||||  | || ||||| |||  || ||| |  |  ||||||||||| |||| |    
T  39070974 ccaaaaacatcaaacctcggagaactgctgattgccaacttattaccacctagcgaactaccactttggaacaacctgcgtgttctcaaccaagactcgt 39071073  T
Q  399 aatcatcccttattttctcatcagaatgcaacataatcatcttgttcatctc 450  Q
    |||  | ||||||||||||||||||||| |||| |||||||||||| |||||    
T  39071074 aatggttccttattttctcatcagaatgtaacaaaatcatcttgtttatctc 39071125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 39086820 - 39086913
Alignment:
Q  1 accaaataattgaaacagcaaagttacatatcctgaaatattgttcactcaagcatatcctaaacaatttcagaccagaaaaattgtaaatagc 94  Q
    ||||||||||||||||||||| || ||||||||| || |||||||||  |||||||||||||||||||||||||||||||||| ||||||||||    
T  39086820 accaaataattgaaacagcaatgtaacatatccttaattattgttcaaacaagcatatcctaaacaatttcagaccagaaaaaatgtaaatagc 39086913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 146 - 336
Target Start/End: Original strand, 39097556 - 39097746
Alignment:
Q  146 tcatttcccaaagcctccaatatctcgaaagaaagacaaacttcaatatcaatgctaccttcttcagctccagcatacacagtaatcttcccattacttt 245  Q
    |||||||||| ||||||||| || ||  ||||||| |||||||||| |||||| |||||||||||    |||  | ||| ||| ||| | |||| |||||    
T  39097556 tcatttcccatagcctccaaaatatcataagaaaggcaaacttcaacatcaatactaccttcttctatcccactaaacatagttatcgttccatcacttt 39097655  T
Q  246 tatttgaacccccacttcgaacccctaccggcttcccccaaccaaaatcattaccataaacatcaatcctctgagaaccactcgtcgccaa 336  Q
    |||||| ||||||||||| |||  | || ||||| ||||||||||| ||||||||||||||||||| |||  |||||| ||| || |||||    
T  39097656 tatttgcacccccacttctaacagcaacaggcttaccccaaccaaagtcattaccataaacatcaaaccttggagaactactagttgccaa 39097746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 39080265 - 39080362
Alignment:
Q  114 attacttagaactaggaaccaaggactcggcatcatttcccaaagcctccaatatctcgaaagaaagacaaacttcaatatcaatgctaccttcttca 211  Q
    ||||||||||||  ||||||| | |||| | ||||||||||||||||||||| || ||  ||||||||||||  |||| ||  || ||||||||||||    
T  39080265 attacttagaacatggaaccatgaactcagtatcatttcccaaagcctccaaaatttcataagaaagacaaagctcaacatttatactaccttcttca 39080362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 7615241 - 7615277
Alignment:
Q  275 ggcttcccccaaccaaaatcattaccataaacatcaa 311  Q
    ||||| |||||||||||||||||||||||||||||||    
T  7615241 ggctttccccaaccaaaatcattaccataaacatcaa 7615277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 39075094 - 39075159
Alignment:
Q  145 atcatttcccaaagcctccaatatctcgaaagaaagacaaacttcaatatcaatgctaccttcttc 210  Q
    ||||||||||| ||||||||| || ||  ||| ||||||||||| ||||||||  |||||||||||    
T  39075094 atcatttcccatagcctccaaaatatcataaggaagacaaacttgaatatcaacactaccttcttc 39075159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 7637055 - 7637091
Alignment:
Q  275 ggcttcccccaaccaaaatcattaccataaacatcaa 311  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  7637055 ggctttccccatccaaaatcattaccataaacatcaa 7637091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 7656265 - 7656229
Alignment:
Q  275 ggcttcccccaaccaaaatcattaccataaacatcaa 311  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  7656265 ggctttccccatccaaaatcattaccataaacatcaa 7656229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 178 - 311
Target Start/End: Original strand, 4356 - 4489
Alignment:
Q  178 aagacaaacttcaatatcaatgctaccttcttcagctccagcatacacagtaatcttcccattacttttatttgaacccccacttcgaacccctaccggc 277  Q
    |||||| |||||||  || |||||||| |||||  | || |||||||||  |||||| ||||| ||||||||||||||||||||||||||||| || ||     
T  4356 aagacatacttcaaggtccatgctaccatcttctacacctgcatacacataaatctttccatttcttttatttgaacccccacttcgaacccccacaggt 4455  T
Q  278 ttcccccaaccaaaatcattaccataaacatcaa 311  Q
    || |||||||||||||||||||||||||||||||    
T  4456 tttccccaaccaaaatcattaccataaacatcaa 4489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 15745100 - 15745033
Alignment:
Q  244 tttatttgaacccccacttcgaacccctaccggcttcccccaaccaaaatcattaccataaacatcaa 311  Q
    |||||||| ||||||| |||||||||| || || || ||||||||||||||||| |||||||||||||    
T  15745100 tttatttgcacccccagttcgaacccccacaggttttccccaaccaaaatcattgccataaacatcaa 15745033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 15196342 - 15196291
Alignment:
Q  215 ccagcatacacagtaatcttcccattacttttatttgaacccccacttcgaa 266  Q
    |||||| ||||| ||||||| |||||||||||||||||||  ||||||||||    
T  15196342 ccagcaaacacactaatctttccattacttttatttgaactaccacttcgaa 15196291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 8936225 - 8936184
Alignment:
Q  270 ctaccggcttcccccaaccaaaatcattaccataaacatcaa 311  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  8936225 ctacaggctttccccatccaaaatcattaccataaacatcaa 8936184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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