View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_140 (Length: 316)
Name: NF11324A_low_140
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_140 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 6 - 309
Target Start/End: Complemental strand, 2017584 - 2017281
Alignment:
| Q |
6 |
aacaactcagcaactatctctcccaaactgcacaacaaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaac |
105 |
Q |
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| T |
2017584 |
aacaactcagcaactatctctcccaaactgcacaacaaagtgtggctctgtcacaattccctttccatttggaaccaccaaggattgttccttggacaac |
2017485 |
T |
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| Q |
106 |
acttttctcataaattgcacctaagcannnnnnnnnnnnnnnnnaacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatct |
205 |
Q |
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||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017484 |
acttttctcataaattgcaccaaagcatcttcttcttcttcttcaacctcaacccatatacctttcctgccacatactaatcaaactgtcctaaacatct |
2017385 |
T |
|
| Q |
206 |
cgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgctacgacgaaaagagcatacaggtgaaccaatcattttggggtatcagaatgac |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017384 |
cgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgctacgacgaaaagagcatacaggtgaaccaatcattttggggtatcagaatgac |
2017285 |
T |
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| Q |
306 |
acat |
309 |
Q |
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|||| |
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| T |
2017284 |
acat |
2017281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 254
Target Start/End: Original strand, 40577234 - 40577448
Alignment:
| Q |
28 |
ccaaactgcacaacaaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcataaattgcacct |
127 |
Q |
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| T |
40577234 |
ccaaactgtccaacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaaggattgttctctagacaacacctttctcatcgattgcaaca |
40577333 |
T |
|
| Q |
128 |
aagcannnnnnnnnnnnnnnnnaacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgt |
227 |
Q |
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|| || |||||||||| | |||| ||| ||||||| |||||||||| ||| ||||||||||| ||| |||||||||| | || |
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| T |
40577334 |
aaacatcttc------------aacctcaacagaggtaccattcttgccacagactaatcaaagtgttctaaacatctcacttaatggtgaacttcacgt |
40577421 |
T |
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| Q |
228 |
tgcatggccagtagccagcgattgcta |
254 |
Q |
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||||||||||||||||||| ||||||| |
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| T |
40577422 |
tgcatggccagtagccagctattgcta |
40577448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 254
Target Start/End: Original strand, 40570921 - 40571025
Alignment:
| Q |
150 |
aacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgat |
249 |
Q |
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| T |
40570921 |
aacctcaacagacgtaccattcttgccacagactaatcaaagtgttctaaacatctcactcgacggtgaactgcgtgctgcatggccagtagcaagtgat |
40571020 |
T |
|
| Q |
250 |
tgcta |
254 |
Q |
| |
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||||| |
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| T |
40571021 |
tgcta |
40571025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 40566267 - 40566340
Alignment:
| Q |
183 |
taatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgctacg |
256 |
Q |
| |
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|||||||| ||||||||| ||||| || |||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
40566267 |
taatcaaaatgtcctaaatatctcactcaatggtgaattgcacgttgcatggccagtagccagcgattgctacg |
40566340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 40566118 - 40566214
Alignment:
| Q |
28 |
ccaaactgcacaacaaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcataaattgca |
124 |
Q |
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| T |
40566118 |
ccaaattgcccaacaaaatgtggttccgtcaccattccctttccatttggaaccactaagaattgttccctcgacaatacctttctcattaattgca |
40566214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 40570821 - 40570899
Alignment:
| Q |
38 |
caacaaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcat |
116 |
Q |
| |
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|||||||||||||| || ||| |||||||| ||||||||||||||||| ||||||| | |||||||| |||||||| |
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| T |
40570821 |
caacaaagtgtggcaatgtcactattcccttcccatttggaaccaccaataattgttctctagacaacacctttctcat |
40570899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 40595654 - 40595727
Alignment:
| Q |
181 |
actaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgcta |
254 |
Q |
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| T |
40595654 |
actaatcaacgtgtcttaaatatatcacttaatggtgaactgcatgttgcatggccagtagccagacattgcta |
40595727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 40600307 - 40600359
Alignment:
| Q |
193 |
gtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccag |
245 |
Q |
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|||||||| ||||| || |||||||| ||||||| ||||||||||||||||| |
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| T |
40600307 |
gtcctaaatatctcactcaatggtgaattgcgtgtcgcatggccagtagccag |
40600359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 8490478 - 8490566
Alignment:
| Q |
28 |
ccaaactgcacaacaaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcat |
116 |
Q |
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|||||||| |||||||||||||||||| ||| |||||||| |||||||||||||||||| |||||| | |||||||| |||||||| |
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| T |
8490478 |
ccaaactgtccaacaaagtgtggctctgtcactattcccttcccatttggaaccaccaagagttgttctctagacaacacctttctcat |
8490566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 254
Target Start/End: Original strand, 8490588 - 8490692
Alignment:
| Q |
150 |
aacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgat |
249 |
Q |
| |
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|||||||||| | |||| ||| ||||||| | |||||||| ||| ||||||||||| || ||||||||||||| ||||||||||||| ||| ||| ||| |
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| T |
8490588 |
aacctcaacagacgtaccattcttgccacagagtaatcaaagtgttctaaacatctcactcgatggtgaactgcatgttgcatggccaataggcagtgat |
8490687 |
T |
|
| Q |
250 |
tgcta |
254 |
Q |
| |
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||||| |
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| T |
8490688 |
tgcta |
8490692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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