View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_142 (Length: 315)
Name: NF11324A_low_142
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_142 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 182 - 301
Target Start/End: Original strand, 29717 - 29836
Alignment:
| Q |
182 |
taccaattatcaatatatcaagtggacaatacaaagtaattgggtccaaccagttaatctgaattgtaacatagatgaatactattttatgagtaaactt |
281 |
Q |
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| T |
29717 |
taccaaatataaatatatcaagtggacaacacaaagtaattgggtccaaccagttaatctaaattgttgcatagatgaatactattttataagtaaactt |
29816 |
T |
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| Q |
282 |
gatgtgtgatgttttatgtt |
301 |
Q |
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| T |
29817 |
gatgtgtaatgttttatgtt |
29836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 293
Target Start/End: Original strand, 31094224 - 31094487
Alignment:
| Q |
23 |
acttacagcttgacaacctagctaagattggccaattgaaaaagatttgtagattcttactattgtatggtgtattgattcttgatatagtg-atttccc |
121 |
Q |
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| T |
31094224 |
acttacagcttgacaacctagctaacattggcc-actaaaaaagatttgtagatt-ttattattgcatggtgtattgattcttgggatattgcagtccca |
31094321 |
T |
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| Q |
122 |
agaattgattaatttaattgaattaaattaaaatcattattttgcaacaacactataccataccaattatcaatat----atcaagtggacaatacaaag |
217 |
Q |
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| T |
31094322 |
aaaattgattaattt-----tattaaattaaaatcaattttttgtaacaacaat-----atagcaaaaatcaatataccaaccaagtggacgacacaaag |
31094411 |
T |
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| Q |
218 |
taattgggtccaaccagttaatctgaattgtaacatagatgaatactattttatgagtaaacttgatgtgtgatgt |
293 |
Q |
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| T |
31094412 |
taattgggtccaagtagctacaatgaattgtaacatagacgaatactattttataagtaaactaggtgtgtgatgt |
31094487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 295
Target Start/End: Original strand, 2972 - 3179
Alignment:
| Q |
76 |
ttcttactattgtatggtgtattgattcttgatatagtgatttcccagaattgattaatttaattgaattaaattaaaatcattattttgcaacaacact |
175 |
Q |
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| T |
2972 |
ttcttattattgtattgcgtattgattattgggatattgaagtcccaaaattgattaatttaattaaattaa--ttaaatcatttttttgcaacaacagt |
3069 |
T |
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| Q |
176 |
ataccataccaattatcaatatatcaagtggacaatacaaagtaattgggtccaaccagttaatctgaattgtaacatagatgaatactattttatgagt |
275 |
Q |
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| T |
3070 |
gtagca----aaatatcaatataccaagaggacaatacaaa------gggtccaaacagtcgcactgaaatgtaacatagacgaatatcattttataggt |
3159 |
T |
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| Q |
276 |
aaacttgatgtgtgatgttt |
295 |
Q |
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| T |
3160 |
aaacttggtgtgtaatgttt |
3179 |
T |
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