View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11324A_low_143 (Length: 313)
Name: NF11324A_low_143
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11324A_low_143 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 2499179 - 2499462
Alignment:
| Q |
12 |
atgaaaaaacaaattcttaggacatgaagtgtgtttgagaacagaatgaattgcagccatagagcctctcaaataatcccaatcaatagtcattgaaata |
111 |
Q |
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| T |
2499179 |
atgaaaaaacaaattcttaggacatgaagtgtgtttgagaacagaatgaattgcagccatagagcctctcaaataatcccaatcaatagtcattgaaata |
2499278 |
T |
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| Q |
112 |
tgaacaagtgaaggatcacatacatattgatcaatatcaatttttctatcaactactttgcatttttgcatatttctatattctggggcctctttgaatt |
211 |
Q |
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| T |
2499279 |
tgaacaagtgaaggatcacatacatattgatcaatatcaatttttctatcaactactttgcatttttgcatatttctatattctggggcctctttgaatt |
2499378 |
T |
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| Q |
212 |
gtataaatgaatcaactttgacctcaaattctttgacattgtttgaaagagatctagtagcatttgcttgaaagagaaggaaag |
295 |
Q |
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| T |
2499379 |
gtataaatgaatcaactttgacctcaaattctttgacattgtttgaaagagatctagtagcatttgcttgaaagagaagaaaag |
2499462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 27101767 - 27102050
Alignment:
| Q |
12 |
atgaaaaaacaaattcttaggacatgaagtgtgtttgagaacagaatgaattgcagccatagagcctctcaaataatcccaatcaatagtcattgaaata |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27101767 |
atgaaaaaacaaattcttaggacatgaagtgtgtttgagaacagaatgaattgcagccatagagcctctcaaataatcccaatcaatagtcattgaaata |
27101866 |
T |
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| Q |
112 |
tgaacaagtgaaggatcacatacatattgatcaatatcaatttttctatcaactactttgcatttttgcatatttctatattctggggcctctttgaatt |
211 |
Q |
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| T |
27101867 |
tgaacaagtgaaggatcacatacatattgatcaatatcaatttttctatcaactactttgcatttttgcatatttctatattctggggcctctttgaatt |
27101966 |
T |
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| Q |
212 |
gtataaatgaatcaactttgacctcaaattctttgacattgtttgaaagagatctagtagcatttgcttgaaagagaaggaaag |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27101967 |
gtataaatgaatcaactttgacctcaaattctttgacattgtttgaaagagatctagtagcatttgcttgaaagagaagaaaag |
27102050 |
T |
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