View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11324A_low_15 (Length: 457)

Name: NF11324A_low_15
Description: NF11324A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11324A_low_15
NF11324A_low_15
[»] chr5 (4 HSPs)
chr5 (21-439)||(14357264-14357682)
chr5 (386-440)||(40815572-40815626)
chr5 (386-440)||(30915794-30915848)
chr5 (393-433)||(30915872-30915912)
[»] chr7 (5 HSPs)
chr7 (21-442)||(29657305-29657732)
chr7 (386-440)||(22794086-22794140)
chr7 (410-440)||(4973822-4973852)
chr7 (329-369)||(7147577-7147617)
chr7 (404-440)||(32893746-32893782)
[»] chr4 (7 HSPs)
chr4 (21-284)||(21731006-21731277)
chr4 (21-132)||(5547328-5547439)
chr4 (387-440)||(5547210-5547263)
chr4 (376-440)||(37642274-37642338)
chr4 (401-440)||(54373769-54373808)
chr4 (404-440)||(49923530-49923566)
chr4 (404-438)||(49922825-49922859)
[»] chr1 (3 HSPs)
chr1 (320-440)||(49619511-49619624)
chr1 (328-440)||(40778688-40778794)
chr1 (406-440)||(40779411-40779445)
[»] chr8 (2 HSPs)
chr8 (328-440)||(16497127-16497232)
chr8 (387-440)||(11080778-11080831)
[»] scaffold0034 (1 HSPs)
scaffold0034 (345-440)||(98356-98444)
[»] chr2 (2 HSPs)
chr2 (386-439)||(20921830-20921883)
chr2 (375-434)||(12365769-12365828)
[»] chr6 (2 HSPs)
chr6 (387-440)||(682572-682625)
chr6 (325-361)||(682643-682679)
[»] scaffold2117 (1 HSPs)
scaffold2117 (314-434)||(203-317)
[»] scaffold0171 (1 HSPs)
scaffold0171 (323-440)||(28943-29053)


Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 21 - 439
Target Start/End: Original strand, 14357264 - 14357682
Alignment:
Q  21 agaagaaaaagttgggtagtgtgtgattatgaactgaagtgcaattgggttaagaaatgaacgtgagccatgcttcaattcactcagttgaagaagttcc 120  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  14357264 agaagaaaaagttgggtagtgtgtgattatgaattgaagtgcaattgggttaagaaatgaaggtgagccatgcttcaattcacccagttgaagaagttcc 14357363  T
Q  121 aactactgatggcgatggtggtgttgatattgctgaacgaaatagtgaggatgaaggatattcaaggcatgcccgatactgctggtggcctttctctgcg 220  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14357364 aactactgatggcgatggtggtgttgatgttgctgaacgaaatagtgaggatgaaggatattcaaggcatgcccgatactgctggtggcctttctctgcg 14357463  T
Q  221 tatttttcaatttattttcgctgctgatgcgctgtctgctatggctttcactagttattttcctaacatcaaacaccttccctctatgtcttttggtgaa 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14357464 tatttttcaatttattttcgctgctgatgcgctgtctgctatggctttcactagttattttcctaacatcaaacaccttccctctatgtcttttggtgaa 14357563  T
Q  321 agggaaggattttggtgatagaaagtttctttttggagttaatgagttttggactttgatgatctgattttgaatgatgttggtggtgttaattataaat 420  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14357564 agggaatgattttggtgataaaaagtttctttttggagttaatgagttttggactttgatgatctgattttgaatgatgttgatggtgttaattataaat 14357663  T
Q  421 ttaaatgtttgattttgtg 439  Q
    |||||||||||||||||||    
T  14357664 ttaaatgtttgattttgtg 14357682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 386 - 440
Target Start/End: Complemental strand, 40815626 - 40815572
Alignment:
Q  386 gattttgaatgatgttggtggtgttaattataaatttaaatgtttgattttgtgg 440  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40815626 gattttgaatgatggtggtggtgttaattataaatttaaatgtttgattttgtgg 40815572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 440
Target Start/End: Complemental strand, 30915848 - 30915794
Alignment:
Q  386 gattttgaatgatgttggtggtgttaattataaatttaaatgtttgattttgtgg 440  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||| |||||    
T  30915848 gattttgaatgatggtggtggtgttaattataaatttaaaggtttgattatgtgg 30915794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 30915872 - 30915912
Alignment:
Q  393 aatgatgttggtggtgttaattataaatttaaatgtttgat 433  Q
    ||||||| ||||| ||||||||||||||||||| |||||||    
T  30915872 aatgatggtggtgatgttaattataaatttaaaggtttgat 30915912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 21 - 442
Target Start/End: Complemental strand, 29657732 - 29657305
Alignment:
Q  21 agaagaaaaagttgggtagtgtgtgattatgaactgaagtgcaattgggttaagaaatgaacgtgagccatgcttcaattcactcagttgaagaagttcc 120  Q
    |||||||||||||||||  |||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||  | |||||||||||||    
T  29657732 agaagaaaaagttgggtgatgtgtgattatgaattgaagtgaaattgggttaagaaatgaatgtgagccatgcttcaattcaccaaattgaagaagttcc 29657633  T
Q  121 aactactgatggcgatggtg------gtgttgatattgctgaacgaaatagtgaggatgaaggatattcaaggcatgcccgatactgctggtggcctttc 214  Q
    |||||||||||| |||||||      |||||| | ||||||||| ||||||||||||||||||||||||||||||||||| ||| || |||||||||||     
T  29657632 aactactgatggtgatggtgatggtggtgttgttgttgctgaacaaaatagtgaggatgaaggatattcaaggcatgcccaatagtgttggtggccttta 29657533  T
Q  215 tctgcgtatttttcaatttattttcgctgctgatgcgctgtctgctatggctttcactagttattttcctaacatcaaacaccttccctctatgtctttt 314  Q
    |||||||||||| |||||||| |||  || |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  29657532 tctgcgtattttgcaatttatattctttgttgatgcgctgtctgttatggctttcactagttattttcgtaacatcaaacaccttccctctatatctttt 29657433  T
Q  315 ggtgaaagggaaggattttggtgatagaaagtttctttttggagttaatgagttttggactttgatgatctgattttgaatgatgttggtggtgttaatt 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  29657432 ggtgaaagggaaggattttggtgatagaaagtttctttttggagttaatgagttttggactttgatgatccgattttgaatgatggtggtggtgttaatt 29657333  T
Q  415 ataaatttaaatgtttgattttgtggat 442  Q
    |||||||||||||||||||||| |||||    
T  29657332 ataaatttaaatgtttgattttttggat 29657305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 22794086 - 22794140
Alignment:
Q  386 gattttgaatgatgttggtggtgttaattataaatttaaatgtttgattttgtgg 440  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||||| |||||    
T  22794086 gattttgaatgattgtggtggtgttaattataaatttaaaggtttgattatgtgg 22794140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 440
Target Start/End: Original strand, 4973822 - 4973852
Alignment:
Q  410 taattataaatttaaatgtttgattttgtgg 440  Q
    |||||||||||||||||||||||||||||||    
T  4973822 taattataaatttaaatgtttgattttgtgg 4973852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 7147577 - 7147617
Alignment:
Q  329 attttggtgatagaaagtttctttttggagttaatgagttt 369  Q
    ||||||||||  |||||||||||||||||||||||| ||||    
T  7147577 attttggtgaatgaaagtttctttttggagttaatgggttt 7147617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 440
Target Start/End: Complemental strand, 32893782 - 32893746
Alignment:
Q  404 tggtgttaattataaatttaaatgtttgattttgtgg 440  Q
    ||||||||||||||||||||||| || ||||||||||    
T  32893782 tggtgttaattataaatttaaattttcgattttgtgg 32893746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 7e-47; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 21 - 284
Target Start/End: Original strand, 21731006 - 21731277
Alignment:
Q  21 agaagaaaaagttgggtagtgtgtgattatgaactgaagtgcaattgggttaagaaatgaacgtgagccatgcttcaattcactcagttgaagaagttcc 120  Q
    ||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21731006 agaagaaaaagttgggtggtgtgtgattatgaattgaagtgtaattgggtgaagaaatgaacgtgagccatgcttcaattcacccagttgaagaagttcc 21731105  T
Q  121 aactactgatggcgatggtggtgttgatattgctgaacgaa--------------atagtgaggatgaaggatattcaaggcatgcccgatactgctggt 206  Q
    |||||||      ||||||||||||| | ||||||||| ||              || ||||||||||||||||||||||||||||| | ||||  ||||    
T  21731106 aactact------gatggtggtgttgctgttgctgaacaaaacgtgaatgttcctatggtgaggatgaaggatattcaaggcatgcctggtactattggt 21731199  T
Q  207 ggcctttctctgcgtatttttcaatttattttcgctgctgatgcgctgtctgctatggctttcactagttattttcct 284  Q
    |||||| || ||||| |||  || ||| |||| || |||| |||||| |||| |||||||| ||| ||| ||||||||    
T  21731200 ggccttgctttgcgtgtttcacagtttgtttttgcggctgctgcgctatctgttatggcttccaccagtgattttcct 21731277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 5547439 - 5547328
Alignment:
Q  21 agaagaaaaagttgggtagtgtgtgattatgaactgaagtgcaattgggttaagaaatgaacgtgagccatgcttcaattcactcagttgaagaagttcc 120  Q
    ||||||||||||||||| |  || ||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||  |||||||| ||||||     
T  5547439 agaagaaaaagttgggtggcatgagattatgaattgaagtgcaattggatgaagaaatgaacgtgagccatgcttcaattcatccagttgaaaaagttcg 5547340  T
Q  121 aactactgatgg 132  Q
    ||||| ||||||    
T  5547339 aactattgatgg 5547328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 440
Target Start/End: Complemental strand, 5547263 - 5547210
Alignment:
Q  387 attttgaatgatgttggtggtgttaattataaatttaaatgtttgattttgtgg 440  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| |||||    
T  5547263 attttgaatgatggtggtggtgttaattataaatttaaaggtttgattatgtgg 5547210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 37642274 - 37642338
Alignment:
Q  376 ttgatgatctgattttgaatgatgttggtggtgttaattataaatttaaatgtttgattttgtgg 440  Q
    |||||||||  ||||||||||||| |||||||||| |||||||||||||| |||||||| |||||    
T  37642274 ttgatgatccaattttgaatgatggtggtggtgttgattataaatttaaaggtttgattatgtgg 37642338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 401 - 440
Target Start/End: Original strand, 54373769 - 54373808
Alignment:
Q  401 tggtggtgttaattataaatttaaatgtttgattttgtgg 440  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  54373769 tggtggtgttagttataaatttaaatgtttgattttgtgg 54373808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 440
Target Start/End: Original strand, 49923530 - 49923566
Alignment:
Q  404 tggtgttaattataaatttaaatgtttgattttgtgg 440  Q
    ||||||||||| |||||||||||||||||||||||||    
T  49923530 tggtgttaattttaaatttaaatgtttgattttgtgg 49923566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 438
Target Start/End: Complemental strand, 49922859 - 49922825
Alignment:
Q  404 tggtgttaattataaatttaaatgtttgattttgt 438  Q
    |||| ||||||||||||||||||||||||||||||    
T  49922859 tggtcttaattataaatttaaatgtttgattttgt 49922825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 320 - 440
Target Start/End: Original strand, 49619511 - 49619624
Alignment:
Q  320 aagggaaggattttggtgatagaaagtttctttttggagttaatgagttttggactttgatgatctgattttgaatgatgttggtggtgttaattataaa 419  Q
    ||||||||||||||||||| |||||||||| |||||||||||||| |||||||       |||||||||||||||||||| |||||||||||||| ||||    
T  49619511 aagggaaggattttggtgaaagaaagtttcgttttggagttaatgggttttgg-------tgatctgattttgaatgatggtggtggtgttaattctaaa 49619603  T
Q  420 tttaaatgtttgattttgtgg 440  Q
    |||||||||||||||||||||    
T  49619604 tttaaatgtttgattttgtgg 49619624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 328 - 440
Target Start/End: Complemental strand, 40778794 - 40778688
Alignment:
Q  328 gattttggtgatagaaagtttctttttggagttaatgagttttggactttgatgatctgattttgaatgatgttggtggtgttaatt--ataaatttaaa 425  Q
    ||||||||||||||| |||| |||||||||||||||| |||||||       ||||| |||||||||||||| ||||||||||||||  |||||||||||    
T  40778794 gattttggtgatagatagtt-ctttttggagttaatgggttttgg-------tgatccgattttgaatgatggtggtggtgttaattttataaatttaaa 40778703  T
Q  426 tgtttgattttgtgg 440  Q
    |||||||||||||||    
T  40778702 tgtttgattttgtgg 40778688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 440
Target Start/End: Original strand, 40779411 - 40779445
Alignment:
Q  406 gtgttaattataaatttaaatgtttgattttgtgg 440  Q
    |||||||||||||||||||||||||||||||||||    
T  40779411 gtgttaattataaatttaaatgtttgattttgtgg 40779445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 328 - 440
Target Start/End: Complemental strand, 16497232 - 16497127
Alignment:
Q  328 gattttggtgatagaaagtttctttttggagttaatgagttttggactttgatgatctgattttgaatgatgttggtggtgttaa-ttataaatttaaat 426  Q
    |||||||||||||||||||| |||||||||||| ||| ||||||       |||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  16497232 gattttggtgatagaaagtt-ctttttggagttgatgggttttg-------atgatccgattttgaatgatggtggtggtgttaatttataaatttaaat 16497141  T
Q  427 gtttgattttgtgg 440  Q
    ||||||||||||||    
T  16497140 gtttgattttgtgg 16497127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 440
Target Start/End: Original strand, 11080778 - 11080831
Alignment:
Q  387 attttgaatgatgttggtggtgttaattataaatttaaatgtttgattttgtgg 440  Q
    ||||||||||||  ||||||||||||||||||||||||| |||||||| |||||    
T  11080778 attttgaatgatagtggtggtgttaattataaatttaaaggtttgattatgtgg 11080831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 345 - 440
Target Start/End: Complemental strand, 98444 - 98356
Alignment:
Q  345 gtttctttttggagttaatgagttttggactttgatgatctgattttgaatgatgttggtggtgttaattataaatttaaatgtttgattttgtgg 440  Q
    |||||||||||||||||||| |||||||       ||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  98444 gtttctttttggagttaatgggttttgg-------tgatccgattttgaatgatggtggtggtgttaattataaatttaaatgtttaattttgtgg 98356  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 20921883 - 20921830
Alignment:
Q  386 gattttgaatgatgttggtggtgttaattataaatttaaatgtttgattttgtg 439  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  20921883 gattttgaatgatggtggtggtgttaattataaatttaaatgtttgactttgtg 20921830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 375 - 434
Target Start/End: Original strand, 12365769 - 12365828
Alignment:
Q  375 tttgatgatctgattttgaatgatgttggtggtgttaattataaatttaaatgtttgatt 434  Q
    |||| ||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  12365769 tttggtgatccgattttgaatgatggtggtggtgttaattataaatttaaaggtttgatt 12365828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 440
Target Start/End: Complemental strand, 682625 - 682572
Alignment:
Q  387 attttgaatgatgttggtggtgttaattataaatttaaatgtttgattttgtgg 440  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| |||||    
T  682625 attttgaatgatggtggtggtgttaattataaatttaaaggtttgattatgtgg 682572  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 361
Target Start/End: Complemental strand, 682679 - 682643
Alignment:
Q  325 aaggattttggtgatagaaagtttctttttggagtta 361  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  682679 aaggattttggtgagagaaaatttctttttggagtta 682643  T

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Target: scaffold2117 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold2117
Description:

Target: scaffold2117; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 434
Target Start/End: Original strand, 203 - 317
Alignment:
Q  314 tggtgaaag-ggaaggattttggtgatagaaagtttctttttggagttaatgagttttggactttgatgatctgattttgaatgatgttggtggtgttaa 412  Q
    ||||||||| |||||| ||||||||| | |||||||||||||||||| ||||||||||||       |||||  |||||| |||||| | ||||||||||    
T  203 tggtgaaagaggaagggttttggtgagaaaaagtttctttttggagtgaatgagttttgg-------tgatccaattttggatgatggttgtggtgttaa 295  T
Q  413 ttataaatttaaatgtttgatt 434  Q
    ||||| ||||||  ||||||||    
T  296 ttatagatttaagggtttgatt 317  T

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Target: scaffold0171 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 440
Target Start/End: Original strand, 28943 - 29053
Alignment:
Q  323 ggaaggattttggtgatagaaagtttctttttggagttaatgagttttggactttgatgatctgattttgaatgatgttggtggtgttaattataaattt 422  Q
    |||||||||| |||||  ||||||||||||||||||| |||| |||||||       |||||  |||||| |||||| | |||||||||||| || ||||    
T  28943 ggaaggatttgggtgaatgaaagtttctttttggagtgaatgggttttgg-------tgatccaattttggatgatggttgtggtgttaattgtagattt 29035  T
Q  423 aaatgtttgattttgtgg 440  Q
    ||| |||||||| |||||    
T  29036 aaaggtttgattatgtgg 29053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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